View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_34 (Length: 349)
Name: NF3365_low_34
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 7898450 - 7898124
Alignment:
| Q |
16 |
ttaatctcttcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaatta |
115 |
Q |
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| T |
7898450 |
ttaatctcctcaaccatttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaatta |
7898351 |
T |
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| Q |
116 |
gccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgcaacca |
215 |
Q |
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| T |
7898350 |
gccaagcccctctcctccatttcttcttgcaccacatgcccaaccaacaatcaatatggatgaataaattaggtgaattaataagaaagaattgcaacca |
7898251 |
T |
|
| Q |
216 |
ccgcatcacctccaaccaaactctacatgtaacttgggaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacgcatctctttgag |
315 |
Q |
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| T |
7898250 |
ccgcatcacctccaaccaaacactacatgtaacttggcaatgtaagaacaagtgtaatgtcgattcatcctctaggccacaaaacacacatctctttgag |
7898151 |
T |
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| Q |
316 |
ccttctatcgccaaaagctttcttctc |
342 |
Q |
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| T |
7898150 |
ccttcaattgccaaaagccttcttctc |
7898124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 21281552 - 21281601
Alignment:
| Q |
28 |
accatttcatcaacctccttaaccttgtcattgaaaatccggtcatttct |
77 |
Q |
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| T |
21281552 |
accatttcatcaacctccttaattttgttattaaaaatctggtcatttct |
21281601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 27895122 - 27895217
Alignment:
| Q |
31 |
atttcatcaacctccttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccct |
126 |
Q |
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| T |
27895122 |
atttcatcaacatccttaaccttgttgttaaagatcccgtcatttctcgattttcaaataacccaaattaccgaatgccaaattaaccaaacccct |
27895217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 36857279 - 36857394
Alignment:
| Q |
28 |
accatttcatcaacctc--cttaaccttgtcattgaaaatccggtcatttctagaattccaaattacccaaataaccgaatgccaaattagccaagcccc |
125 |
Q |
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| T |
36857279 |
accatttcatcaacctctacttgaccttattgttaaagatccagtcatttctcgacttccaaataacccaaattgccgaaagccaaattaaccaagcccc |
36857378 |
T |
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| Q |
126 |
tctcctccatttcttc |
141 |
Q |
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|||| || |||||||| |
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| T |
36857379 |
tctcttcaatttcttc |
36857394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 36857467 - 36857508
Alignment:
| Q |
204 |
gaattgcaaccaccgcatcacctccaaccaaactctacatgt |
245 |
Q |
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| T |
36857467 |
gaattgaaaccacctcatcacctccaaccaaactctagatgt |
36857508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 27895295 - 27895331
Alignment:
| Q |
204 |
gaattgcaaccaccgcatcacctccaaccaaactcta |
240 |
Q |
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|||||||| |||||||||||| ||||||||||||||| |
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| T |
27895295 |
gaattgcagccaccgcatcacatccaaccaaactcta |
27895331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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