View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_35 (Length: 348)

Name: NF3365_low_35
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_35
NF3365_low_35
[»] chr1 (7 HSPs)
chr1 (11-177)||(3158342-3158508)
chr1 (182-321)||(3158162-3158301)
chr1 (13-177)||(30091894-30092058)
chr1 (14-177)||(12928624-12928787)
chr1 (35-177)||(19477368-19477510)
chr1 (35-177)||(3215058-3215200)
chr1 (30-108)||(46149301-46149379)
[»] chr8 (6 HSPs)
chr8 (14-174)||(25939014-25939174)
chr8 (28-119)||(7176109-7176200)
chr8 (36-99)||(30273684-30273747)
chr8 (12-159)||(896709-896856)
chr8 (28-107)||(44587643-44587722)
chr8 (12-177)||(40796522-40796687)
[»] chr2 (6 HSPs)
chr2 (28-165)||(13221826-13221963)
chr2 (32-119)||(32835920-32836007)
chr2 (28-111)||(40492433-40492517)
chr2 (35-177)||(14150249-14150391)
chr2 (128-174)||(27950988-27951034)
chr2 (32-104)||(11524085-11524157)
[»] chr7 (3 HSPs)
chr7 (14-174)||(28841456-28841616)
chr7 (21-177)||(27804627-27804783)
chr7 (28-106)||(2274831-2274909)
[»] chr3 (6 HSPs)
chr3 (29-159)||(19792278-19792408)
chr3 (31-107)||(22522573-22522649)
chr3 (31-175)||(1538899-1539043)
chr3 (31-107)||(54332511-54332587)
chr3 (36-104)||(6032806-6032874)
chr3 (28-119)||(25422068-25422159)
[»] chr6 (3 HSPs)
chr6 (31-158)||(1512284-1512411)
chr6 (31-88)||(5477351-5477408)
chr6 (34-102)||(12200396-12200464)
[»] chr5 (3 HSPs)
chr5 (27-174)||(14489254-14489401)
chr5 (18-92)||(38356649-38356723)
chr5 (27-102)||(27039786-27039859)
[»] chr4 (3 HSPs)
chr4 (29-153)||(11116161-11116285)
chr4 (47-103)||(50858462-50858518)
chr4 (28-119)||(26622653-26622744)
[»] scaffold0169 (1 HSPs)
scaffold0169 (31-100)||(22742-22811)
[»] scaffold0036 (2 HSPs)
scaffold0036 (128-174)||(44378-44424)
scaffold0036 (107-174)||(53755-53822)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 3158508 - 3158342
Alignment:
Q  11 cagagaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3158508 cagagaagttgtaatctttattttgaaaactctaaggtagagtttagtcggagacaagcgagtgaagtcactcatactcttgctcgagaggccactttct 3158409  T
Q  111 tagttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||    
T  3158408 tagttagtcttcatatctttaatactgcacctctttgtatttcgactttgattattgatgaacagct 3158342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 321
Target Start/End: Complemental strand, 3158301 - 3158162
Alignment:
Q  182 gatgttaattgggggttagtttggaaaagaaacaataaatacatctaataactttaaaatggacatatattttaggacaaagttgtagttaaatgagtgg 281  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3158301 gatgttaattgggggttagtttggaaaagaaacaataaatgcatctaataactttaaaatggacatatatttaaggacaaagttgtagttaaatgagtgg 3158202  T
Q  282 ttatgtttatggacatagataataacacgattttttattc 321  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  3158201 ttatgtttgtggacatagataataacacgatttattattc 3158162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 30092058 - 30091894
Alignment:
Q  13 gagaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttctta 112  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||| |||||| |||  || ||| |||| ||||| |||||||||| ||||||||||    
T  30092058 gagaagttgtgatctctattttgaaaacactaaggtagagtttagtcggagacaatcgaaggaggtcgctcacactctagctcgagaggacactttctta 30091959  T
Q  113 gttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
      |||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||    
T  30091958 actagtctccatatctttaatgttgcaccactttgtatttcgactttgattattaatgaaaagct 30091894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 12928624 - 12928787
Alignment:
Q  14 agaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttag 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| | | ||  |||| ||| |  |||||||| |||||||||||     
T  12928624 agaagttgtaatctttactttgaaaactctaaggtagagtttagtcggaaacaagcgaataaggttgctcacactttatctcgagagaccactttcttaa 12928723  T
Q  114 ttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
     | |||  |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  12928724 cttgtccccatatctttaatgttgcacctctttgtatttcgactttgattattaatgaaaagct 12928787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 19477368 - 19477510
Alignment:
Q  35 gaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatctttaatg 134  Q
    |||||||| | ||||||||||||||| |||||||||| ||| ||| |||| |||||||| ||||||||||||||||||| |||||  ||||  |||||||    
T  19477368 gaaaactccatggtagagtttagtcggagacaagcgaatgaggtcgctcacactcttgcacgagaggccactttcttagctagtccccatacttttaatg 19477467  T
Q  135 ttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
     || ||||| ||||||| |||| || ||| || || |||||||    
T  19477468 atgtacctcattgtattacgacgttgatttttaatcaaaagct 19477510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 177
Target Start/End: Original strand, 3215058 - 3215200
Alignment:
Q  35 gaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatctttaatg 134  Q
    |||||||||||||| ||||| ||| | |||||||||| ||| ||| ||||||||||||||  ||||||||  || | |||| |||  ||| |||||||||    
T  3215058 gaaaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcatactcttgctacagaggccatattttcagttggtccccatgtctttaatg 3215157  T
Q  135 ttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
     || |||||| ||||||| |||||| |||| | ||||||||||    
T  3215158 atgtacctctatgtattttgactttgattaataatgaaaagct 3215200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 46149379 - 46149301
Alignment:
Q  30 attttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccacttt 108  Q
    ||||||||||||||||||| ||||||||| ||| ||||| || ||  |||  ||| |||||||||||||| | ||||||    
T  46149379 attttgaaaactctaaggtggagtttagttgaaaacaagggaatgtggtcgttcagactcttgctcgagatgtcacttt 46149301  T

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Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 174
Target Start/End: Original strand, 25939014 - 25939174
Alignment:
Q  14 agaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttag 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||| |||| ||| | ||||||||||||||||||||||    
T  25939014 agaagttgtaatctttactttgaaaactctaaggtagagtttagtcggagacaagcgaatgaggtcgctcacactttagctcgagaggccactttcttag 25939113  T
Q  114 ttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
     || ||  |||||||||||||||||||||||||||||||||||||| | |||| |||||||    
T  25939114 ctaatccccatatctttaatgttgcacctctttgtatttcgactttgagtattaatgaaaa 25939174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 7176109 - 7176200
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtc 119  Q
    |||||||||||| |||||||| |||||| || | |||||||||| ||||||| |||||| | | ||||||||||| || ||||||| |||||    
T  7176109 ttattttgaaaattctaaggttgagttttgtaggagacaagcgaatgaagtcgctcataatttagctcgagaggctacattcttagctagtc 7176200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 30273747 - 30273684
Alignment:
Q  36 aaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgaga 99  Q
    ||||| ||||||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||    
T  30273747 aaaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcatactcttgctagaga 30273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 896856 - 896709
Alignment:
Q  12 agagaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttctt 111  Q
    ||||||| |||| | | ||||||||||||||||||||||||||||  || ||||| || |  |  ||  || |||| |||||| |||| | |||||| ||    
T  896856 agagaagatgtagtgtgtattttgaaaactctaaggtagagtttaaacggagacaggcaaacgtggttgctaatacacttgctagagaagtcactttatt 896757  T
Q  112 agttagtcttcatatctttaatgttgcacctctttgtatttcgacttt 159  Q
    || ||||| |||| ||||| ||| || || ||||||||||||||||||    
T  896756 agctagtcctcatctctttgatgatgtacttctttgtatttcgacttt 896709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 44587643 - 44587722
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactt 107  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||| ||  ||  ||||| ||||||||| ||| |||||||    
T  44587643 ttattttgaaaactctaaggtggagtttagtcggagacaatcgaatgtggttgctcatgctcttgctcaagaagccactt 44587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 177
Target Start/End: Original strand, 40796522 - 40796687
Alignment:
Q  12 agagaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttctt 111  Q
    ||||||| |||| | | ||||||||||||| ||||||  |||||| ||| | |||||| | ||  ||  ||||||| |||||| |||| |||||||| ||    
T  40796522 agagaagatgtagtgtgtattttgaaaactttaaggtgaagtttaatcggaaacaagcaaatgtggttgctcatacacttgctagagatgccactttatt 40796621  T
Q  112 agttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
    || |||||   || ||||| ||| || ||||||||||||||||| ||| ||  || ||||||||||    
T  40796622 agctagtccctatctctttgatgatgtacctctttgtatttcgattttgatatttaatgaaaagct 40796687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 13221826 - 13221963
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatc 127  Q
    ||||||||||||||||||||||||||||||||  |||||||| | ||| ||  ||||||| |||||| || | | ||||||||||  |||||  || ||     
T  13221826 ttattttgaaaactctaaggtagagtttagtcagagacaagcaactgaggttgctcatacacttgctagaaatgtcactttcttaactagtccccaaatt 13221925  T
Q  128 tttaatgttgcacctctttgtatttcgacttttattat 165  Q
    |||||||||||||||||||||||||||||||| |||||    
T  13221926 tttaatgttgcacctctttgtatttcgactttaattat 13221963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 32836007 - 32835920
Alignment:
Q  32 tttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtc 119  Q
    ||||||||||||||||| ||||||||||| |||||| ||| ||| ||  |||||| |||||| ||||||||||||||| ||| |||||    
T  32836007 tttgaaaactctaaggttgagtttagtcggagacaaacgaatgaggtagctcataatcttgcacgagaggccactttcctagctagtc 32835920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 40492433 - 40492517
Alignment:
Q  28 ttattttgaaaactctaa-ggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttctt 111  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||| ||| ||| |||| ||  ||||||||||||||| ||||||    
T  40492433 ttattttgtaaactctaaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacatttgctcgagaggccaatttctt 40492517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 14150391 - 14150249
Alignment:
Q  35 gaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatctttaatg 134  Q
    |||||||||||||  ||||| ||||| |||||||||| ||| ||| ||||||||||||||  ||||||||  |||| || | |||  ||| | ||||||     
T  14150391 gaaaactctaaggatgagttcagtcggagacaagcgaatgaggtcgctcatactcttgctaaagaggccatattctcagctggtccccatgtatttaata 14150292  T
Q  135 ttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
     || |||||| ||||||| |||||| |||| | ||||||||||    
T  14150291 atgtacctctatgtattttgactttgattaataatgaaaagct 14150249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 27950988 - 27951034
Alignment:
Q  128 tttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  27950988 tttaatgttgtacctctttgtatttcgactttgattattaatgaaaa 27951034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 11524157 - 11524085
Alignment:
Q  32 tttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggcca 104  Q
    ||||||||||||||| | ||||||| | | |||||||||| |  |||| |||||||| ||||| |||||||||    
T  11524157 tttgaaaactctaagattgagtttaataggagacaagcgaatatagtcgctcatactattgctagagaggcca 11524085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 28841616 - 28841456
Alignment:
Q  14 agaagttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttag 113  Q
    ||||||||| | ||||| ||| ||||||||||||||||||||||||| || ||||| | ||| ||  || |  |||| | |||||||| |||| ||||||    
T  28841616 agaagttgtgaactttaatttaaaaactctaaggtagagtttagtcggagtcaagcaaatgaggttgcttactctctagttcgagaggtcactgtcttag 28841517  T
Q  114 ttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
    || |||| ||||||||||||| ||||||||||| ||||| |||||| |||||| |||||||    
T  28841516 ttggtctccatatctttaatgatgcacctctttatattttgactttgattattaatgaaaa 28841456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 27804783 - 27804627
Alignment:
Q  21 gtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtct 120  Q
    ||||| ||| ||| |||||||||||||| ||||| ||||| | |||||||| ||| ||| |||||||||||||| |||||||||  |||| || | |||     
T  27804783 gtaatgtttttttcgaaaactctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgctagagaggccatattctcagctggtcc 27804684  T
Q  121 tcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaagct 177  Q
     ||| ||||||||| || |||||| ||||||| |||||| |||| | ||||||||||    
T  27804683 ccatgtctttaatgatgtacctctatgtattttgactttgattaataatgaaaagct 27804627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 2274909 - 2274831
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccact 106  Q
    |||||||||||||| ||||||  |||||||||| |||||||||| ||  ||| |||||| ||||||||||||| |||||    
T  2274909 ttattttgaaaactttaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatattcttgctcgagagcccact 2274831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 19792278 - 19792408
Alignment:
Q  29 tattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatct 128  Q
    |||||||||||||||||||| ||||||| ||| |||||||| | ||  ||  ||||||| |||||| ||||||||||||| |||| |||||  ||| |||    
T  19792278 tattttgaaaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggccactttattagctagtccccatctct 19792377  T
Q  129 ttaatgttgcacctctttgtatttcgacttt 159  Q
    || ||| || |||||||||||||||||||||    
T  19792378 ttgatgatgtacctctttgtatttcgacttt 19792408  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 22522649 - 22522573
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactt 107  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||  ||| ||||||||||||||||||| |||||||    
T  22522649 ttttgaaaactctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaagccactt 22522573  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 1539043 - 1538899
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatcttt 130  Q
    |||||||||||||||||| ||||||||||| |||||||||| |   ||| ||||||||||||||| |||||||| || | ||  ||||   ||| | |||    
T  1539043 ttttgaaaactctaaggtggagtttagtcggagacaagcgaatatggtcgctcatactcttgctccagaggccatttccctaactagttcccatgttttt 1538944  T
Q  131 aatgttgcacctctttgtatttcgacttttattattgatgaaaag 175  Q
     ||| || |||||||||||| |||||||| ||| || ||||||||    
T  1538943 gatgatgtacctctttgtatctcgactttgatttttaatgaaaag 1538899  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 54332587 - 54332511
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactt 107  Q
    |||| ||||||||||||| ||||||||||| |||||| ||| ||  ||| |||||||||||||||||||||||||||    
T  54332587 ttttcaaaactctaaggtggagtttagtcggagacaaacgaatgtggtcgctcatactcttgctcgagaggccactt 54332511  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 6032874 - 6032806
Alignment:
Q  36 aaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggcca 104  Q
    ||||||||||||| | ||||||||| |||||||||| ||  ||| ||||||||||||||||||||||||    
T  6032874 aaaactctaaggtggtgtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggcca 6032806  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 25422159 - 25422068
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtc 119  Q
    |||||||| ||||||||||||||||||| ||   |||||||||| ||||||| |||||| | | || |||||||| || ||||||| |||||    
T  25422159 ttattttggaaactctaaggtagagttttgtaagagacaagcgaatgaagtcgctcataatttagcccgagaggctacattcttagctagtc 25422068  T

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Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 1512284 - 1512411
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatcttt 130  Q
    ||||||||| |||||||| ||||||||||| |||||||||| ||  ||| ||||||||||||||||||||| || || | ||| |||||  ||||| |||    
T  1512284 ttttgaaaattctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggtcatttccctagctagtccccatattttt 1512383  T
Q  131 aatgttgcacctctttgtatttcgactt 158  Q
     ||| || |||||||||||| |||||||    
T  1512384 gatgatgtacctctttgtatctcgactt 1512411  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 5477408 - 5477351
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatact 88  Q
    |||||||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||    
T  5477408 ttttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactcatact 5477351  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 12200464 - 12200396
Alignment:
Q  34 tgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggc 102  Q
    |||||||| |||| | ||||||||| | |||||||||| ||| ||| |||||||||||||| |||||||    
T  12200464 tgaaaactttaagatggagtttagttggagacaagcgaatgaggtcgctcatactcttgctagagaggc 12200396  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 14489401 - 14489254
Alignment:
Q  27 tttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatat 126  Q
    ||||||| ||||||||||||||  |||||||||| |||||||||| ||| ||| |||||||||||||| |||||||    ||||||| |||||  ||  |    
T  14489401 tttatttcgaaaactctaaggtgaagtttagtcggagacaagcgaatgaggtcgctcatactcttgctagagaggctttattcttagctagtccccaagt 14489302  T
Q  127 ctttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
     ||||||| || |||||||||||||| ||| || |||| | |||||||    
T  14489301 ttttaatgatgtacctctttgtattttgacattgattaataatgaaaa 14489254  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 38356649 - 38356723
Alignment:
Q  18 gttgtaatctttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttg 92  Q
    |||||||| ||||||| ||||| |||||||| || |||||||| ||||||| |||||||||| ||||||||||||    
T  38356649 gttgtaatgtttatttcgaaaattctaaggtggaatttagtcggagacaagtgagtgaagtccctcatactcttg 38356723  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 27039859 - 27039786
Alignment:
Q  27 tttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggc 102  Q
    ||||||| |||||||||||||| |||||||   | |||| ||||| ||| ||| |||||||||||||| |||||||    
T  27039859 tttatttcgaaaactctaaggtggagttta--aggagacgagcgaatgaggtcgctcatactcttgctagagaggc 27039786  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 11116161 - 11116285
Alignment:
Q  29 tattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcatatct 128  Q
    ||||||| |||||||||||||||||||||||| ||||||||||  || ||| |||| |||||||| | ||||||||| | ||||| |||||  ||||  |    
T  11116161 tattttgcaaactctaaggtagagtttagtcggagacaagcgaacgaggtcgctcacactcttgcacaagaggccacgtccttagctagtccccataatt 11116260  T
Q  129 ttaatgttgcacctctttgtatttc 153  Q
    |||||| ||  ||| ||||||||||    
T  11116261 ttaatgatgtgcctttttgtatttc 11116285  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 50858462 - 50858518
Alignment:
Q  47 gtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggcc 103  Q
    |||||||||||||| ||||||||||  || ||| |||||||||||||||||||||||    
T  50858462 gtagagtttagtcggagacaagcgaacgaggtcgctcatactcttgctcgagaggcc 50858518  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 26622653 - 26622744
Alignment:
Q  28 ttattttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtc 119  Q
    |||||||  ||||||||||||||||||| || | |||||||||| ||||||| || ||| | | ||||||||||| || ||||||| |||||    
T  26622653 ttattttagaaactctaaggtagagttttgtaggagacaagcgaatgaagtcgcttataatttagctcgagaggctacattcttagctagtc 26622744  T

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Target: scaffold0169 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 22811 - 22742
Alignment:
Q  31 ttttgaaaactctaaggtagagtttagtcgaagacaagcgagtgaagtcactcatactcttgctcgagag 100  Q
    ||||||||||||||||||  |||||||||| |||||||||| ||  ||| ||||||||||||||||||||    
T  22811 ttttgaaaactctaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagag 22742  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 44378 - 44424
Alignment:
Q  128 tttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  44378 tttaatgttgtacctctttgtatttcgactttgattattaatgaaaa 44424  T

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Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 53755 - 53822
Alignment:
Q  107 ttcttagttagtcttcatatctttaatgttgcacctctttgtatttcgacttttattattgatgaaaa 174  Q
    ||||||| |||||  | ||| |||||||||| |||||||| |||||||||||| |||||| |||||||    
T  53755 ttcttagctagtccccgtatttttaatgttgtacctctttatatttcgactttgattattaatgaaaa 53822  T

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