View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_38 (Length: 342)
Name: NF3365_low_38
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 38484632 - 38484316
Alignment:
| Q |
11 |
catcatcatcatgagtatgaccattaagcaatgatactacattacataata----tacccaccaaaaatcatatcctctcccccttcattttcccagaca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484632 |
catcatcatcatgagtatgaccattaagcaatgatactacattacataatacttatacccaccaaaaatcatatcctctcccccttcattttcccagaca |
38484533 |
T |
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| Q |
107 |
aaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattcctttatttcaaaagaaatcactct |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38484532 |
aaatgaaatcattactcaccgcaaaatatgcatctcattcccttcctactttggtttttcacaaacctaatcattcctttatttcaaaagaaaccactct |
38484433 |
T |
|
| Q |
207 |
agtctctaaacccttctagtattatccttcctcttcatcatgatcatgatgaacacctccttatcataatcatccaattcttttttcttgaactgcaaat |
306 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484432 |
agtctctaaacccttttagtattatccttcctcttcatcatgatcatgatgaacacctccttatcataatcatccaattcttttttcttgaactgcaaat |
38484333 |
T |
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| Q |
307 |
cacatttcccactccac |
323 |
Q |
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||||||||||||||||| |
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| T |
38484332 |
cacatttcccactccac |
38484316 |
T |
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