View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_4 (Length: 633)
Name: NF3365_low_4
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_4 |
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| [»] scaffold1944 (1 HSPs) |
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| [»] scaffold1790 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 615
Target Start/End: Original strand, 11587429 - 11588043
Alignment:
| Q |
1 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587429 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
11587528 |
T |
|
| Q |
101 |
atgcaaaattttaaaatatttgagacttgaactatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587529 |
atccaaaattttaaaatatttgagacttgaactatcaatgttaacttcatctccagagaaatcacagttattaagtgtgaggttttcaagagatgaacaa |
11587628 |
T |
|
| Q |
201 |
tgagaaataatctcttgaaaattgcttgatgaaacacacacttgattgagggtaagagttttcaaaacctggttgagatcatgggaaggtgtagttataa |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11587629 |
tgagaaataatctcttgaaaattgtttgatgaaacacacacttgattgagggtaagagttttcaaaacctggttgagatcaagggaaggtgtagttataa |
11587728 |
T |
|
| Q |
301 |
aacaataatgattcaactcaagaacctcaaaactagtgaaaatctcaaaaggtaaatccaaagttcgtttagcttcccctaaaagaatataatttagtgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
11587729 |
aacaataatgattcaactcaagaacctcaaaactagtgaaaatctcaaaaggtaaatccaaagttcgtttagcttgccccaaaagaatataatttagtgt |
11587828 |
T |
|
| Q |
401 |
tataaaatattcataggactcaagtcccattgaaacctttaccacccctttctcaagtagtttcttcatccatcgcacaacatctccattgacacaactc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11587829 |
tataaaatattcataggactcaagtcccattgaaacctttaccacccctttctcaagtagtttcttcatccaccgcacaacatctccattgacacaactc |
11587928 |
T |
|
| Q |
501 |
atacctaaatgtcgaatattacagcttttcaatggaccaatgtgtttatccatgattgacataattaacatggatgcttcagcaactgtatccaactttg |
600 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11587929 |
atacctaaatgccgaatattacagcttttcaatggaccaatgtgtttatccatgattgacataattaacatggatgcttcagcaactgtatccaactttg |
11588028 |
T |
|
| Q |
601 |
cattatcttcaggat |
615 |
Q |
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||||||||||||||| |
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| T |
11588029 |
cattatcttcaggat |
11588043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 30372562 - 30372358
Alignment:
| Q |
1 |
ttggggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcat |
100 |
Q |
| |
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|||||||||| ||| |||||||| || | ||| || |||| | ||||||| || ||||| || |||| |||||||| ||||||||| ||||| |||| |
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| T |
30372562 |
ttggggtctcgaaaattagatcttcattataacatataatggttccaatctcaatcacttcaattttagttgcagaaatcaacatcttatgcacggtcat |
30372463 |
T |
|
| Q |
101 |
atgcaaaattttaaaatatttgagacttgaactatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacag |
200 |
Q |
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|| |||| |||||||||||||||||||| |||||||| || || ||||| || | |||| ||| || ||||| ||||| |||||||| || ||||| |
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| T |
30372462 |
atcaaaaaatttaaaatatttgagacttgggctatcaatcttgaccccatctccaaataaattacattttttaagggtgagattttcaagtgacgaacat |
30372363 |
T |
|
| Q |
201 |
tgaga |
205 |
Q |
| |
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||||| |
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| T |
30372362 |
tgaga |
30372358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 31 - 201
Target Start/End: Original strand, 29787464 - 29787634
Alignment:
| Q |
31 |
tacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttga |
130 |
Q |
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||||||| ||||| ||||||||||||||||| | |||| |||||||| ||| ||| | |||||||||| | ||||||||| |||||| ||||||| |
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| T |
29787464 |
tacaaataatggagtcaatctctatgacttcaacattaaatgcagaaatcaaaatcctaagcacattcatcttacaaattttaatatatttcagacttgg |
29787563 |
T |
|
| Q |
131 |
actatcaatgttaacttcatcttcagagaaatcacagttattaagtgtgaggttttcaagagatgaacagt |
201 |
Q |
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||| |||| |||| ||||||| ||||||||||||| | | || |||||||||||||||||||||| |
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| T |
29787564 |
acttacaatcttaagttcatctcttaagaaatcacagttctcgacggtaaggttttcaagagatgaacagt |
29787634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 30376226 - 30376134
Alignment:
| Q |
53 |
tatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
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||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
30376226 |
tatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
30376134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 30372158 - 30372097
Alignment:
| Q |
411 |
tcataggactcaagtcccattgaaacctttaccacccctttctcaagtagtttcttcatcca |
472 |
Q |
| |
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|||| ||| |||||| ||| |||||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
30372158 |
tcatgggattcaagttccaatgaaacgtttactacccctttctctagtagtttcttcatcca |
30372097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 29837557 - 29837482
Alignment:
| Q |
283 |
gggaaggtgtagttataaaacaataatgattcaactcaagaacctcaaaactagtgaaaatctcaaaaggtaaatc |
358 |
Q |
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|||| |||||||||| |||| ||| | |||||||||||||||| |||||| | ||||| ||||||||||||||| |
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| T |
29837557 |
gggagggtgtagttaaaaaatgatagttcttcaactcaagaaccttaaaactggagaaaacctcaaaaggtaaatc |
29837482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 145
Target Start/End: Complemental strand, 30379397 - 30379256
Alignment:
| Q |
4 |
gggtctcaaaagctagatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatg |
103 |
Q |
| |
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||||||||||| | |||||||| | ||||||| ||| | |||||| ||||||||| || || | || |||||||| |||||||||||| |||| | |
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| T |
30379397 |
gggtctcaaaaaacaaatctttatgattacaaataatgaagccaatctttatgacttcaatgttggatgtggaaaccaaaatcttttgcacaatcatttt |
30379298 |
T |
|
| Q |
104 |
caaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
| |
|
|||| |||||||||||| | |||| ||||||||| ||||| |
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|
| T |
30379297 |
aaaaaatttaaaatattttatacttagactatcaatcttaac |
30379256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 29856350 - 29856286
Alignment:
| Q |
18 |
agatctttatcaatacaaatgatggattcaatctctatgacttccatattagctgcagaaaccaa |
82 |
Q |
| |
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| T |
29856350 |
agatcttcatgattacaaataacggagtcaatctctatgacttccatgttaaatgcagaaaccaa |
29856286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1944 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1944
Description:
Target: scaffold1944; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 405 - 503
Alignment:
| Q |
47 |
aatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
| |
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||||| ||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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|
| T |
405 |
aatctttatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1790 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1790
Description:
Target: scaffold1790; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Original strand, 546 - 644
Alignment:
| Q |
47 |
aatctctatgacttccatattagctgcagaaaccaacatcttttgcacattcatatgcaaaattttaaaatatttgagacttgaactatcaatgttaac |
145 |
Q |
| |
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||||| ||||||||| || || | || ||||||||| |||||||||||| |||| | |||| |||||||||||| ||||||| ||||||||| ||||| |
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| T |
546 |
aatctttatgacttcaatgttggatgtagaaaccaaaatcttttgcacaatcattttaaaaaatttaaaatattttagacttggactatcaattttaac |
644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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