View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_42 (Length: 334)
Name: NF3365_low_42
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_42 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 16792915 - 16792599
Alignment:
| Q |
18 |
agctgcaccttgtgctacaaatttatcagaactggatcatataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacga |
117 |
Q |
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| T |
16792915 |
agctgcaccttgtgctacaaatttatcagaactagatcatataaacggaacaaatgaaggtcacaatccaaaaccatcaactagccgaggaacacaacga |
16792816 |
T |
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| Q |
118 |
ctctacattcgtctcaacaccttacactacctccttgttcaaatccaatctctcgaaaaattgctatctcaaaacacttgccttgttccttcaacaaggc |
217 |
Q |
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| T |
16792815 |
ctctacattcgtctcaacaccttacattacctccttgttcaaatccaatctctcgaaaaattgctatctcaaaaccattgcattgttccttcaacaaggc |
16792716 |
T |
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| Q |
218 |
atagcttcacaagcaatctaagaacacaaagcaccaaaagtggttcatattttgaaacagtaatctcatcacttccagcagcatgtcaaaatgtttcaga |
317 |
Q |
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| T |
16792715 |
atagcttcacaagcaatctaagaacacaaagcaccaaaagtggttcatattttgaaacagtaatctcatcacttccagcagcatgtcaaaatgtttcaga |
16792616 |
T |
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| Q |
318 |
agttgccgcgtaccgtc |
334 |
Q |
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| T |
16792615 |
agttgccgcgtaccgtc |
16792599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 32735252 - 32735304
Alignment:
| Q |
94 |
tcaactagccgaggaacacaacgactctacattcgtctcaacaccttacacta |
146 |
Q |
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| T |
32735252 |
tcaactagccgaggaacacaacgcctctacattcgtatcaacaccttgcacta |
32735304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 14876384 - 14876328
Alignment:
| Q |
97 |
actagccgaggaacacaacgactctacattcgtctcaacaccttacactacctcctt |
153 |
Q |
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| T |
14876384 |
actagccgaggaacacaacgcctctacattcgtctcaacaccttacattatctcctt |
14876328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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