View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_47 (Length: 322)
Name: NF3365_low_47
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 14672621 - 14672924
Alignment:
| Q |
1 |
ttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcga |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
14672621 |
ttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcggttactgttattgtggcaa |
14672720 |
T |
|
| Q |
101 |
aggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
14672721 |
aggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatatgatgacgtttcaaa |
14672820 |
T |
|
| Q |
201 |
gaagagtcgagctgagttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672821 |
gaagagtcgagctgagttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcg |
14672920 |
T |
|
| Q |
301 |
aatt |
304 |
Q |
| |
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|||| |
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| T |
14672921 |
aatt |
14672924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 14677999 - 14678302
Alignment:
| Q |
1 |
ttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcga |
100 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
14677999 |
ttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaagcacgatactatcagcggttactgttattgtggcaa |
14678098 |
T |
|
| Q |
101 |
aggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
14678099 |
aggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatatgatgacgtttcaaa |
14678198 |
T |
|
| Q |
201 |
gaagagtcgagctgagttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14678199 |
gaagagtcgagctgagttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcg |
14678298 |
T |
|
| Q |
301 |
aatt |
304 |
Q |
| |
|
|||| |
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|
| T |
14678299 |
aatt |
14678302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 14666309 - 14666109
Alignment:
| Q |
18 |
catcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggtcgtgttagg |
113 |
Q |
| |
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||||||| |||||||| |||||||| ||||||||| |||||||||||| || | |||||||||| ||||||||||||| || | |||| |||| || |
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| T |
14666309 |
catcaaaagagagctaatatagttcatgaaagtgatgttattgagaagtacgaaactatcagcgattacttactgttattgtagcaatggtcatgttggg |
14666210 |
T |
|
| Q |
114 |
gttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaagaagagtcga |
210 |
Q |
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| ||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
14666209 |
ggtggaaccgggaaaaagatgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcga |
14666110 |
T |
|
| Q |
211 |
g |
211 |
Q |
| |
|
| |
|
|
| T |
14666109 |
g |
14666109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 14687342 - 14687557
Alignment:
| Q |
9 |
atactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggt |
104 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| |||||| ||||||||| | ||| |
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| T |
14687342 |
atactccttcatcaaatgagagctgatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgatatattactgctattgtggcaatggt |
14687441 |
T |
|
| Q |
105 |
cgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaag |
201 |
Q |
| |
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| |||| ||| |||||||| ||||| | |||||||||||||| ||||||| |||| ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
14687442 |
catgttggggctggaatcaagaaaaagttgaaaatagagacgaatccaatatctctcttgttgttgaattaagaatgtatatgatgatgccgtttcaaag |
14687541 |
T |
|
| Q |
202 |
aagagtcgagctgagt |
217 |
Q |
| |
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||||||| || ||||| |
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| T |
14687542 |
aagagtcaagatgagt |
14687557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 304
Target Start/End: Complemental strand, 24057495 - 24057200
Alignment:
| Q |
9 |
atactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcgaaggtcgtg |
108 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| ||||||||||||| ||||||||| || |||| | |||| |||||| ||| |||||| || |
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| T |
24057495 |
atactccttcatcaagtgagagttactatagtttacaaaagtgaagttatcaagaagcacataaccatcaatgattaccgttattaaggcaaaggtcatg |
24057396 |
T |
|
| Q |
109 |
ttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaagaagagtc |
208 |
Q |
| |
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|| |||||||||| || ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |||||||||||| || |
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| T |
24057395 |
ttgtggttggaatcgggtaaagggtgaaaatggagacggatccagtgtctcccatgttgttgaattttgaatgtataggatgccttttcaaagaagattc |
24057296 |
T |
|
| Q |
209 |
gagctgagttatagagtggtgaaagggtattgttgagtttcgaggtaacagacaaagatttgttggctattatttgaagatttgaatgttcgaatt |
304 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| || | |||| ||||||||| | ||| ||||||||| || |||||||| |||| |
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| T |
24057295 |
gagctgagttataaagtggtgaaagggtattgttcagtttagatgaaacaaccaaagatttttctgcttttatttgaaagttggaatgttcaaatt |
24057200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30734834 - 30735051
Alignment:
| Q |
1 |
ttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtg |
96 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| ||||||||||||| |
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| T |
30734834 |
ttgattgcatactccttcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgattacttactgttattgta |
30734933 |
T |
|
| Q |
97 |
gcgaaggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccg |
193 |
Q |
| |
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|| | |||| |||| ||||||||| | |||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |
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| T |
30734934 |
gcaatggtcatgttggggttggaaccgggaaaaagctgaaattagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgcag |
30735033 |
T |
|
| Q |
194 |
tttcaaagaagagtcgag |
211 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30735034 |
tttcaaagaagagtcgag |
30735051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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