View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_49 (Length: 318)
Name: NF3365_low_49
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_49 |
 | |
|
| [»] scaffold0115 (1 HSPs) |
| | |
|
| [»] scaffold0192 (2 HSPs) |
| | |
|
| [»] scaffold0417 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
| [»] scaffold0211 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 19605814 - 19605539
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19605814 |
tcaactatgaacttgaacatataaacacatcaattccatgaaatttaacatacctgtaactacacataaattaggagcacgaaattcaacataaaaaatc |
19605715 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
19605714 |
acaaaagtcctcttttacacagaagcacttatggcccaaaagtaaaatgatgagattatag---cttatttgatgaaatagttctatctcccttacctca |
19605618 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagctttccacttttcaaagttcttc |
279 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19605617 |
aagcttcaattcctctaattatggcttcactctcccctctagcttccaatctctagctttccacttctcaaagttcttc |
19605539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 2493804 - 2493708
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaa |
97 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2493804 |
tcaactatgaacttgaacatataaacacatcaattccataaaattcaacatactcataattacacatcaattaggagcacgaaaatcaacataaaaa |
2493708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10112350 - 10112148
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| ||| ||||||| ||| |||| || | || ||||||| |||| || |
|
|
| T |
10112350 |
tcaactttgaacttgaacatataaacacatcaattccctaaaattcaacatacccataactacacatcaatcaggaacatggaaatcaacatcaaaattc |
10112251 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
| |||| |||||||| |||| ||| |||||| | |||| ||| || || ||| || |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
10112250 |
ataaaaatcaaaattcacacaaaaacacttaggacccattcgtagaaaaatgagatta---tagcttatttgatgaaatagttctatc-cccttacctca |
10112155 |
T |
|
| Q |
201 |
aagcttc |
207 |
Q |
| |
|
||||||| |
|
|
| T |
10112154 |
aagcttc |
10112148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 10121221 - 10121299
Alignment:
| Q |
162 |
tagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctcta |
241 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||| ||| ||||| |
|
|
| T |
10121221 |
tagcttatttgatgaaatagttctatcc-ccttacctcaaagcttcaaatccactagttatggcttcactatcccctcta |
10121299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 19605531 - 19605491
Alignment:
| Q |
273 |
gttcttctctatattctttccactttctctctctagcctcc |
313 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19605531 |
gttcttctctatattcttcccactttctctctctagcctcc |
19605491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 36906 - 36676
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||| ||||||| || |||||| ||| |||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
36906 |
tcaactatgaagttgaacacataaacacatcaattcggtaaaattcaatatacccataactacacataaattaggagcacgaaattcaacatcaaaaatc |
36807 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
|||||| || |||| |||| |||||||||||| ||||||||||||| ||| ||| || |||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
36806 |
acaaaattcgtaattcacacaaaagcacttatgacccaaaagtaaaaagatgagatta---tagcatatttgatgaaataattatatc-cccttacctca |
36711 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcc |
235 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
36710 |
aagcttcaaagtctctagttatggcttcactctcc |
36676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 13193 - 12937
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| |||||||||| |||| ||| |||||||||||||||||||| ||| ||||| | |||| || |
|
|
| T |
13193 |
tcaactatgaacttgaacacataaacacatcaattccatgaaatttaacacacccataattacacataaattaggagcacaaaactcaacttcaaaaatc |
13094 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||| | | | | |||| || ||| || || |||| | ||||||||||| |||| |||||||||| |
|
|
| T |
13093 |
acaaaagtcataattcacacaaaagcacttatgactcctatgaaaaaatatgagatta---taacttactaaatgaaatagttctatcccccttacctca |
12997 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagcttt |
260 |
Q |
| |
|
|| ||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
12996 |
aaactttaattccactagttatggcttcactctcccctctagcttccaatatctagcttt |
12937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 12909 - 12874
Alignment:
| Q |
274 |
ttcttctctatattctttccactttctctctctagc |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12909 |
ttcttctctctattctttccactttctctctctagc |
12874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 22545934 - 22546208
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
||||| |||||||||||| |||| ||||||| |||||| ||||||||||||||| || |||||||||||||||||||| |||||||||||| | || | |
|
|
| T |
22545934 |
tcaacaatgaacttgaacgcataaacacatca-ttccatgaaatttaacatacccatatatacacataaattaggagcatgaaattcaacatcataaatt |
22546032 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
|| | ||||| |||| |||| |||||||||||| || |||||||||| ||| ||| || ||||||||||||||||| || |||| |||||||||| |
|
|
| T |
22546033 |
actatagtcataattcacacaaaagcacttatgaccgaaaagtaaaaagatgagatta---tagcttatttgatgaaaatgtactatcccccttacctca |
22546129 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagctttccacttttcaaagttcttc |
279 |
Q |
| |
|
|||||| | | |||| ||||| |||||||||| |||||||||||||||||||||||||| ||| | ||||||||| |
|
|
| T |
22546130 |
aagctttacaatcactagctatggtttcactctcccctctagcttccaatctctagctttcctcttcaccaagttcttc |
22546208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 12602888 - 12602805
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaa |
84 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||||| |||||||| |||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
12602888 |
tcaaccatgaacttgaacatgtaaacacatcaattctataaaattcaacatatccataactacacataaattaggagcacgaaa |
12602805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17913698 - 17913764
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacat |
67 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||| ||||||| |
|
|
| T |
17913698 |
tcaactatgaactcgaacatataaacacatcaattccatgaaatttaacatacccataactacacat |
17913764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 244
Target Start/End: Original strand, 20114279 - 20114371
Alignment:
| Q |
152 |
aagaatatagtagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctctctagct |
244 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| ||||||||| ||| |||||| | |||||| ||||||||||||| |||||||| |
|
|
| T |
20114279 |
aagaatattatagcttatttgatgaaatagaactatcctccttaccttaaaccttcaaatttactagtttaggcttcactctcccctctagct |
20114371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 12463691 - 12463615
Alignment:
| Q |
29 |
atcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaa |
106 |
Q |
| |
|
||||||||| | || ||||||||||| ||| ||||||||||||| |||||||| ||||| ||| |||| |||||||| |
|
|
| T |
12463691 |
atcaattccttgaagtttaacatacca-taattacacataaattaagagcacgatattcatcattaaaaatcacaaaa |
12463615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 14305436 - 14305304
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||| ||||| ||||||| |||| || |
|
|
| T |
14305436 |
tcaactacgaacttgaacatataaacacatcaattccataaaatccaacatacccataactacacataaattaggagcccgaaaatcaacatcaaaaatc |
14305337 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatg |
133 |
Q |
| |
|
| |||| ||| |||| |||| |||||||||||| |
|
|
| T |
14305336 |
ataaaaatcataattcacacaaaagcacttatg |
14305304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 15045252 - 15045148
Alignment:
| Q |
26 |
cacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaag |
125 |
Q |
| |
|
|||||||||| ||| || |||| ||||||| ||||| |||| ||||| ||||||||||||||||||||||| |||||||| || |||| ||| |||| |
|
|
| T |
15045252 |
cacatcaatttcatgaagtttatcatacccttaaatttacatgaattatgagcacgaaattcaacataaaaa-tcacaaaatccacaattaacataaaag |
15045154 |
T |
|
| Q |
126 |
cactta |
131 |
Q |
| |
|
|||||| |
|
|
| T |
15045153 |
cactta |
15045148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 19631951 - 19631864
Alignment:
| Q |
44 |
tttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcactta |
131 |
Q |
| |
|
|||| |||||| | |||| ||||| |||||||||||||||||||| || |||| ||||||||| || |||| |||| |||||||||| |
|
|
| T |
19631951 |
tttatcataccagcaaattcacatgaattaggagcacgaaattcattatcaaaaatcacaaaagccacaattaacacaaaagcactta |
19631864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 3692 - 3828
Alignment:
| Q |
2 |
caactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtca |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| || ||||||||| || | | |||||||||||| |||||||||||||| ||| |||| ||| |
|
|
| T |
3692 |
caactatgaacttgaacatataaacacatcaatttcatgaagtttaacatatccattataacacataaattaagagcacgaaattcatcatcaaaaatca |
3791 |
T |
|
| Q |
102 |
caaaagtcaaaatttacaccaaagcacttatggccca |
138 |
Q |
| |
|
||||||||| |||| | || |||||||||||| |||| |
|
|
| T |
3792 |
caaaagtcataattaatacaaaagcacttatgaccca |
3828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29614727 - 29614497
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||| ||| ||| || ||||||||||||| | ||||| |||| |
|
|
| T |
29614727 |
tcaactatgaacttgaacatctaaacacatcaattccatgaaatttaacatacccataattacccatcaactaggagcacgaaaattaacatcaaaa--- |
29614631 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
||| |||| |||| |||||||||||| |||| ||||| || || || || | ||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
29614630 |
-------tcataattcacacgaaagcacttatgacccataagtagaaaaatgagggta---tggcttatttgttgaaatagttatatgccccttaactca |
29614541 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcctctctagct |
244 |
Q |
| |
|
||||||||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
29614540 |
aagcttcaaagccactagttatggcttcgctctcccctctagct |
29614497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 6460132 - 6459876
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||||||||||| |||||||| ||| ||| ||| |||||| |||| |||| || |||||| || | |
|
|
| T |
6460132 |
tcaaccatgaacttgaacatataaatacctcaattccataaaattcaacatacctataactacccatcaattagaagcatgaaaatccacataagaaatt |
6460033 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatagttatatcttccttacctca |
200 |
Q |
| |
|
| |||| ||| |||| |||| |||||||||||| |||| ||||| | | |||||| || ||| ||||| |||||| || |||| |||||||||| |
|
|
| T |
6460032 |
ataaaaatcataattcacacgaaagcacttatgacccataagtaga---aaaagaat-ta-tagtttattcgatgaagtataattatcccccttacctca |
6459938 |
T |
|
| Q |
201 |
aagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagctttcc |
262 |
Q |
| |
|
||||||||| | | ||||||||| ||||||||||||||||| || | | |||||||||||| |
|
|
| T |
6459937 |
aagcttcaaattcactagttatgacttcactctcctctctaactccttagctctagctttcc |
6459876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 17161277 - 17161182
Alignment:
| Q |
2 |
caactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaa |
97 |
Q |
| |
|
|||||||||| || | || |||| || ||||||||||| || |||||||||||| ||| ||||||||||||| |||||||||| ||| ||| |||| |
|
|
| T |
17161277 |
caactatgaatttaagcacataaacatatcaattccatgaagtttaacatacccataattacacataaattaagagcacgaaagtcatcatcaaaa |
17161182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 17913177 - 17913271
Alignment:
| Q |
3 |
aactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaa |
97 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||| || |||||| ||| ||||||| || ||||||||| || | |||||||||| |
|
|
| T |
17913177 |
aactatgaacttgaacatataaacacttcaatctcataaaattgaatatacccataattacacatcaaataggagcacttaaattaacataaaaa |
17913271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 16176659 - 16176726
Alignment:
| Q |
191 |
ccttacctcaaagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagct |
258 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| ||||||||||| || |||| ||||||||||||| |
|
|
| T |
16176659 |
ccttacctcaaagcttcaaattccctagttatgccttcactctcccttcaagctcccaatctctagct |
16176726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 17913333 - 17913409
Alignment:
| Q |
162 |
tagcttatttgatgaaatagttatatcttccttacctcaaagcttcaattcctctagttatggcttcactctcctct |
238 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||| |||||| ||||| || |||||||||||||||| |
|
|
| T |
17913333 |
tagcttatttgatgaaatagtactatcccccttaccttaaaccttcaaaatctctattttaggcttcactctcctct |
17913409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 9804 - 9627
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtc |
100 |
Q |
| |
|
|||||||| ||||||||||||||| ||| |||||||||||||||| ||||||| | ||| ||||||| || |||||||||| || |||||||| ||| || |
|
|
| T |
9804 |
tcaactataaacttgaacatataaacacctcaattccataaaattcaacatacacataattacacatcaactaggagcacggaaatcaacatacaaaatc |
9705 |
T |
|
| Q |
101 |
acaaaagtcaaaatttacaccaaagcacttatggcccaaaagtaaaatgataagaatatagtagcttatttgatgaaatag |
181 |
Q |
| |
|
| |||| || |||| | || |||||||||||| |||| || || | | ||||| || |||||||||||||||||||| |
|
|
| T |
9704 |
ataaaaatcttaattcatacaaaagcacttatgacccataaataga---aaaagaagattatagcttatttgatgaaatag |
9627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 105994 - 105862
Alignment:
| Q |
6 |
tatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaa |
105 |
Q |
| |
|
|||||||||||||| |||| || ||||||||| ||||||| ||||||||| ||| ||| ||| |||||||||||| ||| ||||||||||| ||| || |
|
|
| T |
105994 |
tatgaacttgaacacataaacatatcaattccttaaaattcaacatacccataattactcattaattaggagcacaaaaaccaacataaaaaatcatgaa |
105895 |
T |
|
| Q |
106 |
agtcaaaatttacaccaaagcacttatggccca |
138 |
Q |
| |
|
| ||| |||| |||| |||||||||||| |||| |
|
|
| T |
105894 |
aatcataattcacacaaaagcacttatgaccca |
105862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 16107375 - 16107463
Alignment:
| Q |
191 |
ccttacctcaaagcttcaattcctctagttatggcttcactctcctctctagcttccaatctctagctttccacttttcaaagttcttc |
279 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||| |||||||||| ||| | ||||||||| |
|
|
| T |
16107375 |
ccttacctcaaagcttcaaaatctctagttgtggcttcactctcccctctagcttgcaatccctagctttcctcttccccaagttcttc |
16107463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 13457050 - 13457153
Alignment:
| Q |
2 |
caactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtca |
101 |
Q |
| |
|
|||||||||| || | || |||| || ||||||||||| || |||| ||||||| ||| |||||||||| || |||||| ||||||| |||||||| ||| |
|
|
| T |
13457050 |
caactatgaatttaagcacataaacatatcaattccatgaagtttaccatacccataattacacataaa-taagagcactaaattcatcataaaaaatca |
13457148 |
T |
|
| Q |
102 |
caaaa |
106 |
Q |
| |
|
||||| |
|
|
| T |
13457149 |
caaaa |
13457153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 17364276 - 17364353
Alignment:
| Q |
29 |
atcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaa |
106 |
Q |
| |
|
||||||| ||| || |||| ||| ||| ||||| ||||| ||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
17364276 |
atcaatttcatgaagtttatcatgcccataaattcacatgaattaagagcacgaaattcatcataaaaaatcacaaaa |
17364353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26132759 - 26132811
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatac |
53 |
Q |
| |
|
||||||| ||||||||||| |||| ||||| |||||||| ||||||||||||| |
|
|
| T |
26132759 |
tcaactacgaacttgaacacataaacacattaattccatgaaatttaacatac |
26132811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 26727854 - 26727927
Alignment:
| Q |
58 |
aaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatttacaccaaagcactta |
131 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||| ||| ||| |||||||||||| |||| ||| |||||||||| |
|
|
| T |
26727854 |
aaattcacatgaattaggagcacgaaactcatcatcgaaaatcacaaaagtcacaattaacataaaagcactta |
26727927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 1111 - 1022
Alignment:
| Q |
26 |
cacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaagtcacaaaagtcaaaatt |
115 |
Q |
| |
|
||||| |||| |||||| |||| | ||||| ||||| ||||| ||||| ||| |||||||||| ||| |||| |||||||||||| |||| |
|
|
| T |
1111 |
cacattaatttcataaattttatcgtacccataaattcacatgaattaagagtacgaaattcatcatcaaaattcacaaaagtcacaatt |
1022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 29744520 - 29744481
Alignment:
| Q |
274 |
ttcttctctatattctttccactttctctctctagcctcc |
313 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
29744520 |
ttcttctctctattcttcccactttctctctctagcctcc |
29744481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21932 - 22028
Alignment:
| Q |
1 |
tcaactatgaacttgaacatataatcacatcaattccataaaatttaacatacccgtaaatacacataaattaggagcacgaaattcaacataaaaa |
97 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||||||||| | || || |||||| || ||||||| |||| | ||||||||| | |||||||||| |
|
|
| T |
21932 |
tcaactatgaacttgagcatataaacacttcaattccacatgtttcaaaatacccatacctacacatcaatttgaagcacgaaaattaacataaaaa |
22028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 21719821 - 21719865
Alignment:
| Q |
58 |
aaatacacataaattaggagcacgaaattcaacataaaaagtcac |
102 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
21719821 |
aaattcacatgaattaggagcacgaaattcatcataaaaaatcac |
21719865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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