View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_50 (Length: 318)

Name: NF3365_low_50
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_50
NF3365_low_50
[»] chr4 (4 HSPs)
chr4 (11-305)||(32000851-32001145)
chr4 (11-305)||(31941892-31942186)
chr4 (213-305)||(32003917-32004009)
chr4 (45-114)||(36246545-36246614)
[»] chr7 (2 HSPs)
chr7 (47-114)||(2950124-2950191)
chr7 (198-246)||(28944732-28944780)
[»] chr5 (1 HSPs)
chr5 (11-139)||(18478948-18479076)
[»] chr2 (1 HSPs)
chr2 (45-100)||(37881306-37881361)
[»] chr3 (2 HSPs)
chr3 (45-82)||(20732617-20732654)
chr3 (45-82)||(20740353-20740390)
[»] chr8 (3 HSPs)
chr8 (48-84)||(9622097-9622133)
chr8 (48-78)||(7195709-7195739)
chr8 (45-90)||(39916910-39916955)
[»] chr1 (2 HSPs)
chr1 (38-77)||(27632581-27632620)
chr1 (26-81)||(45594286-45594341)
[»] chr6 (1 HSPs)
chr6 (197-255)||(3912013-3912071)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 32000851 - 32001145
Alignment:
Q  11 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000851 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 32000950  T
Q  111 gaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32000951 gaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctca 32001050  T
Q  211 atgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001051 atgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaac 32001145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 31941892 - 31942186
Alignment:
Q  11 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 110  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941892 cacagatggtcagcaatagcagctcaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 31941991  T
Q  111 gaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31941992 gaatagacccaacaactcacaaaccaaaacaggatcattcacctggaagttccacttctcagtacaccaaagactcagctaacctcagtcacatggctca 31942091  T
Q  211 atgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942092 atgggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaac 31942186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 32003917 - 32004009
Alignment:
Q  213 gggagagtgctcgtttggaagcagaagcaagacttgttagagaaaccaataaactgaaagttcaaagacaacttgagtttgaatcctccaaac 305  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || ||| | |||||||||||||||||| | ||||||||||||||||    
T  32003917 gggaaagtgctcgtttggaagcaaaagcaagacttgttagagaaactaacaaaataaaagttcaaagacaactttaatttgaatcctccaaac 32004009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 36246545 - 36246614
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 114  Q
    ||||||||||||||||||||||||| || |||||||| ||| | | |||||||||   ||||||||||||    
T  36246545 gaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaat 36246614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 2950124 - 2950191
Alignment:
Q  47 agaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgggaat 114  Q
    |||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||| | |||||||||    
T  2950124 agaacagataatgaaatcaagaactattggaacacacatcttaagaaaagattaaccaaaatgggaat 2950191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 28944780 - 28944732
Alignment:
Q  198 gtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagact 246  Q
    |||||||||||||||||||||||||  |  | |||||||||||||||||    
T  28944780 gtcacatggctcaatgggagagtgcaaggcttgaagcagaagcaagact 28944732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 18478948 - 18479076
Alignment:
Q  11 cacagatggtcagcaatagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagactaacaagaatgg 110  Q
    |||||||||||  |||||||||| |  || ||||| |||||||| |||||||| |||||  | |||||||   || ||||||||||||| |  |||||||    
T  18478948 cacagatggtccacaatagcagctctcctgccaaggagaacagataatgaaataaagaatcattggaacattaacatcaagaaaagactcatcagaatgg 18479047  T
Q  111 gaatagacccaacaactcacaaaccaaaa 139  Q
    | ||||| || || |||||||||||||||    
T  18479048 ggatagatcccaccactcacaaaccaaaa 18479076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 37881361 - 37881306
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  37881361 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 20732654 - 20732617
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacaca 82  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20732654 gaagaacagacaatgaaataaagaactactggaacaca 20732617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 20740390 - 20740353
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacaca 82  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20740390 gaagaacagacaatgaaataaagaactactggaacaca 20740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 9622097 - 9622133
Alignment:
Q  48 gaacagacaatgaaatcaagaactactggaacacaca 84  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9622097 gaacagacaatgaaataaagaactactggaacacaca 9622133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 78
Target Start/End: Original strand, 7195709 - 7195739
Alignment:
Q  48 gaacagacaatgaaatcaagaactactggaa 78  Q
    |||||||||||||||||||||||||||||||    
T  7195709 gaacagacaatgaaatcaagaactactggaa 7195739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 39916910 - 39916955
Alignment:
Q  45 gaagaacagacaatgaaatcaagaactactggaacacacacctcaa 90  Q
    |||||||||||||||| ||||||||||| |||||||| ||| ||||    
T  39916910 gaagaacagacaatgagatcaagaactattggaacactcacatcaa 39916955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 27632620 - 27632581
Alignment:
Q  38 cttccaagaagaacagacaatgaaatcaagaactactgga 77  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  27632620 cttccaggaagaacagacaatgaaatcaagaactattgga 27632581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 45594341 - 45594286
Alignment:
Q  26 atagcagcacaacttccaagaagaacagacaatgaaatcaagaactactggaacac 81  Q
    |||||||| ||||| ||| |||||||||||||||| || |||||||| ||||||||    
T  45594341 atagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 3912013 - 3912071
Alignment:
Q  197 agtcacatggctcaatgggagagtgctcgtttggaagcagaagcaagacttgttagaga 255  Q
    |||||||||||||||||||| |||||| |  | ||||| ||||| ||||||||||||||    
T  3912013 agtcacatggctcaatgggaaagtgctagacttgaagctgaagctagacttgttagaga 3912071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University