View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_51 (Length: 310)
Name: NF3365_low_51
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 34 - 307
Target Start/End: Complemental strand, 37305205 - 37304932
Alignment:
| Q |
34 |
tgttgcttcattctggtaagttctaaatgaggagtagcagaggatcgagcgttgttcgcatgttgtgttggctatgtggggtgaatggagttatgcggta |
133 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37305205 |
tgttgcatcattctggtaagttctaaatgaggagtagcagaggatcaagcgttgttcgcatgttgtgttggctatgtggggtgaatggagttatgcagta |
37305106 |
T |
|
| Q |
134 |
tatattctggtatattatgttgaaggttggtgcatatccctcttctattattcacgtttatgaacatgctgattgattaattttggcaatatgtattgaa |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37305105 |
tatattctggtatattatgttgaaggttggtgcatatccctcttctattattcacgtttatgaacatgctgattgattaattttggcaatatgtattgaa |
37305006 |
T |
|
| Q |
234 |
gtgtcaaggctagttgataagtgactaaaggagtttatgtagaccttatatgcattggcagcaagctatttcat |
307 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37305005 |
gtgtcaaggctagttgataagcgactaaaggagtttatgtagaccttatatgcattggcagcaagctatttcat |
37304932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University