View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_54 (Length: 308)
Name: NF3365_low_54
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 51267002 - 51267246
Alignment:
| Q |
8 |
atcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaaccat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
51267002 |
atcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccaccgcgcaaaaaccacacttccaaaaaaaaccccaaccat |
51267101 |
T |
|
| Q |
108 |
catgcacgcaactatctccatcacaccacacaaatactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccga |
207 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51267102 |
cacgcacgcaactatctccatcacaccacacaaacactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccga |
51267201 |
T |
|
| Q |
208 |
aaacactgtaacaaacgattatgatgcttcgtctctctactacat |
252 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
51267202 |
aaacaccgtaagaaacgattatgatgcttcgtctccctactacat |
51267246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 252
Target Start/End: Original strand, 27261146 - 27261351
Alignment:
| Q |
44 |
atccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaaccatcatgcacgcaactatctccatcacaccacacaaata |
143 |
Q |
| |
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||||||||||||||| |||| | || | |||||||||||||| |||||||| |||||||| ||| |||||||| ||||||||||||| |||| | |
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| T |
27261146 |
atccaagcctaccccatccaaaacaccacgcaaaaaccacacctccaaaaaacccc--aaccatcacgcaagcaactatttccatcacaccacgcaaaca |
27261243 |
T |
|
| Q |
144 |
ctaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccgaaaac-actgtaacaaacgattatgatgcttcgtctc |
242 |
Q |
| |
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| ||||||||||||| || |||||||| |||||| ||||||||| ||||||||||||||||| ||||| || |||| |||| |||||||||| ||||| |
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| T |
27261244 |
ccaataacctcgctaaccctcccgttgaccaccatccattttgctaccatttagacatcaccaaaaacaaccgtaaaaaac--ttatgatgctccgtctg |
27261341 |
T |
|
| Q |
243 |
tctactacat |
252 |
Q |
| |
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||||||||| |
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| T |
27261342 |
cctactacat |
27261351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 6 - 252
Target Start/End: Original strand, 26677327 - 26677573
Alignment:
| Q |
6 |
acatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaacc |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| | | |||| |||||||||||||||| |||| |
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| T |
26677327 |
acatcatcacaagctgccataaaatccgaaactagattatccaagcctaccctgtccataccaccactcaaataccacacttccaaaaaaaaaaccaacc |
26677426 |
T |
|
| Q |
106 |
atcatgcacgcaactatctccatcacaccacacaaatactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcacc |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26677427 |
atcacgcacgcaactatctccatcacaccaagcaaacaccaataacctcgctacccttcccgttggccaccacctattttgccaccatttagacatcact |
26677526 |
T |
|
| Q |
206 |
gaaaacactgtaacaaacgattatgatgcttcgtctctctactacat |
252 |
Q |
| |
|
|||||||| |||| |||||||| ||||||| |||||| ||||||||| |
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|
| T |
26677527 |
gaaaacaccgtaagaaacgattttgatgctccgtctccctactacat |
26677573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 13980655 - 13980858
Alignment:
| Q |
12 |
tcacaagctgccacaaaatccgaaa-ctagattatccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaaccatcat |
110 |
Q |
| |
|
|||||||| |||||| |||| |||| |||||||||||||||||||||| |||||| || | |||||||||||| | |||||| |||| ||| |
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| T |
13980655 |
tcacaagccgccacagaatctgaaaactagattatccaagcctaccccatccatatcaccatgcaaaaaccacaacttcaaaaaccctc--aaccgtcac |
13980752 |
T |
|
| Q |
111 |
gcacgcaactatct----ccatcacaccacacaaatactaataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccg |
206 |
Q |
| |
|
||| ||| ||| || |||||||||||| |||| || ||||| ||||||| || ||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
13980753 |
gcaagcagctagctacctccatcacaccacgcaaacaccaataatctcgctaaccctcccgttggccaccacccattttgccaccgtttaaacatcaccg |
13980852 |
T |
|
| Q |
207 |
aaaaca |
212 |
Q |
| |
|
|||||| |
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|
| T |
13980853 |
aaaaca |
13980858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 19289960 - 19290190
Alignment:
| Q |
6 |
acatcatcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaacc |
105 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||| ||| |||| |||| |
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|
| T |
19289960 |
acatcatcacaagttgccacaaaatccgaaactagattatccaagcctaccccatccataccaccatgcaaaaatcacacctcc-aaaacccccccaacc |
19290058 |
T |
|
| Q |
106 |
atcatgcacgcaactatctccatcacaccacacaaatactaataacctcgct-acccttcccgttggccaccacccattttgccaccatttagacatcac |
204 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||| |||| ||||||||||||||| | || ||||||||||||||||||||||| ||||| |||| ||||||| |
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| T |
19290059 |
atcacgcaagcagctatctccatcacaccacgcaaacactaataacctcgctaaaccctcccgttggccaccacccattttaccaccgtttaaacatcac |
19290158 |
T |
|
| Q |
205 |
cgaaaac-actgtaacaaacgattatgatgct |
235 |
Q |
| |
|
| ||| | || |||| |||| ||||||||||| |
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| T |
19290159 |
caaaagcaaccgtaagaaacaattatgatgct |
19290190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 3958886 - 3958730
Alignment:
| Q |
12 |
tcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccatcgcgcaaaaaccacacttccaaaaannnnnnnaaccatcatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||| ||| | || |||||||| |
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|
| T |
3958886 |
tcacaagctgccacaaaatccgaaactagattatccacgcctaccccatccatacccccacgcaaaaaccacacctcccacaaaacccccaaccatcaca |
3958787 |
T |
|
| Q |
112 |
cacgcaactatctccatcacaccacacaaatactaataacctcgctacccttcccgtt |
169 |
Q |
| |
|
|| | | || |||||||||||||||||||| || ||||||||||||| || ||||||| |
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|
| T |
3958786 |
caagtagct-tctccatcacaccacacaaacaccaataacctcgctaaccctcccgtt |
3958730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 27844581 - 27844698
Alignment:
| Q |
119 |
ctatctccatcacaccacacaaatactaataacctcgctac-ccttcccgttggccaccacccattttgccaccatttagacatcaccgaaaac-actgt |
216 |
Q |
| |
|
|||||||||||||||||| |||| || |||||||||| || || ||| ||||||| |||||||||||||||||||||| |||||||| ||| | || || |
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|
| T |
27844581 |
ctatctccatcacaccacgcaaacaccaataacctcgttaaaccctcctgttggcc-ccacccattttgccaccatttaaacatcaccaaaagcaaccgt |
27844679 |
T |
|
| Q |
217 |
aacaaacgattatgatgct |
235 |
Q |
| |
|
|| |||||||| ||||||| |
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|
| T |
27844680 |
aaaaaacgattttgatgct |
27844698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 13995291 - 13995217
Alignment:
| Q |
12 |
tcacaagctgccacaaaatccgaaactagattatccaagcctaccccgtccataccatcgcgcaaaaaccacact |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| | ||||||||| | ||||||||||||||| |
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|
| T |
13995291 |
tcacaagctgccacaaaatccgaaactagattattcaagcctacctcatccataccaccacgcaaaaaccacact |
13995217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 13995176 - 13995110
Alignment:
| Q |
146 |
aataacctcgctacccttcccgttggccaccacccattttgccaccatttagacatcaccgaaaaca |
212 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||||| ||| |||| |||||||| |||||| |
|
|
| T |
13995176 |
aataacctcgctaaccctcccattggccaccacccattttgcaaccgtttaaacatcaccaaaaaca |
13995110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 23649898 - 23649817
Alignment:
| Q |
102 |
aaccatcatgcacg-caactatctccatcacaccacacaaatactaataacctcgctacccttcccgttggccaccacccat |
182 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||| || ||||||||||| | || ||| ||| ||||||||||| |
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|
| T |
23649898 |
aaccatcatgcaagacagctatctccatcacaccacacaaacaccaataacctcgcaaaccctcctcttgaccaccacccat |
23649817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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