View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_56 (Length: 299)
Name: NF3365_low_56
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26286971 - 26287254
Alignment:
| Q |
1 |
taccacatatggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatactt |
100 |
Q |
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| T |
26286971 |
taccacatatggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatactt |
26287070 |
T |
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| Q |
101 |
aacagattttttgtcagcaggttcagaatatccctgaaaataaaaataaccaccaactaacatctgcgtatcaaaaacatatatggtatacttatagatt |
200 |
Q |
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| T |
26287071 |
aacagattttttgtcagcaggttgagaatatccctgaaaataaaaataaccaccaactaacatctgcgt---------atatatggtatacttatagatt |
26287161 |
T |
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| Q |
201 |
ttagcactaaatcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcagtggtataattcacctttgccgttcatctca |
293 |
Q |
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| T |
26287162 |
ttagcactaaatcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcactggcataattcacctttgccgttcttctca |
26287254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 26312232 - 26312505
Alignment:
| Q |
11 |
ggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagatttt |
110 |
Q |
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| T |
26312232 |
ggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgtccatgataatacttaacagatttt |
26312331 |
T |
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| Q |
111 |
ttgtcagcaggttcagaatatccctgaaaataaaaataaccaccaactaacatctgcgtatcaaaaacatatatggtatacttatagattttagcactaa |
210 |
Q |
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| T |
26312332 |
ttgtcagcaggttgagaatatccctgaaaataaaaataaccaccaactaacatctgcgt---------atatatggtatacttatagattttagcactaa |
26312422 |
T |
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| Q |
211 |
atcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcagtggtataattcacctttgccgttcatctca |
293 |
Q |
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| T |
26312423 |
atcggccttggtattaatagaaaaaagtggaaaataaagctaaatgttagcactggcataattcacctttgccgttcttctca |
26312505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7202699 - 7202779
Alignment:
| Q |
1 |
taccacatatggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaa |
81 |
Q |
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|||||||||||||||||||| |||||| | ||||| |||| || |||||||||||||| |||| | |||||||||||| |
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| T |
7202699 |
taccacatatggatccatgttcgaagccggacgcctgtcttccaagtaacctacaatcaaaacagaagcaaaggtaaacaa |
7202779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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