View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_58 (Length: 289)
Name: NF3365_low_58
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 8878564 - 8878830
Alignment:
| Q |
13 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttga--atg |
110 |
Q |
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| T |
8878564 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttgaatatg |
8878663 |
T |
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| Q |
111 |
ctgaacctgaaccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttcc |
210 |
Q |
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| T |
8878664 |
ctgaacctgaaccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgct-------acgcttttaatccctttttggactgttcc |
8878756 |
T |
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| Q |
211 |
actta-----------aacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacat |
273 |
Q |
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| T |
8878757 |
acttaccacgttatggaacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacat |
8878830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 8863235 - 8863156
Alignment:
| Q |
13 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagcc |
94 |
Q |
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| T |
8863235 |
aatatggtgttaaattgtgtccatataatactgtaaatttccgg--gggggaatggtttgtgtcctacacaacaccttagcc |
8863156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 8862973 - 8862894
Alignment:
| Q |
129 |
tggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttccactta |
215 |
Q |
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| T |
8862973 |
tggtttatctgctttttgatatgcatggcttgttccttcacat-------gccacgcttttaagccctttttggactgttccactta |
8862894 |
T |
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