View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_59 (Length: 286)

Name: NF3365_low_59
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_59
NF3365_low_59
[»] chr5 (36 HSPs)
chr5 (91-252)||(1401428-1401589)
chr5 (16-87)||(18307308-18307379)
chr5 (16-86)||(542738-542808)
chr5 (18-82)||(42865754-42865818)
chr5 (16-86)||(25497566-25497636)
chr5 (16-87)||(35564315-35564386)
chr5 (68-141)||(3603207-3603281)
chr5 (65-141)||(18310077-18310154)
chr5 (16-87)||(11346061-11346133)
chr5 (65-147)||(18538391-18538474)
chr5 (71-141)||(20192293-20192364)
chr5 (72-141)||(20200211-20200281)
chr5 (65-137)||(35567083-35567156)
chr5 (16-86)||(8537220-8537291)
chr5 (65-147)||(34682191-34682274)
chr5 (68-141)||(3600276-3600350)
chr5 (30-80)||(20192414-20192464)
chr5 (68-141)||(42937132-42937206)
chr5 (16-80)||(3600398-3600462)
chr5 (68-147)||(19228705-19228785)
chr5 (66-141)||(42537141-42537217)
chr5 (65-147)||(1398538-1398621)
chr5 (67-141)||(33995206-33995281)
chr5 (73-147)||(25499951-25500028)
chr5 (16-53)||(1401388-1401425)
chr5 (67-150)||(24053111-24053195)
chr5 (18-87)||(19037416-19037489)
chr5 (87-134)||(41201675-41201722)
chr5 (68-141)||(512799-512873)
chr5 (65-145)||(8702254-8702336)
chr5 (67-151)||(30611169-30611254)
chr5 (68-136)||(33993225-33993294)
chr5 (65-137)||(38968039-38968112)
chr5 (18-86)||(7994-8065)
chr5 (68-132)||(7762303-7762367)
chr5 (67-138)||(7796604-7796676)
[»] chr3 (57 HSPs)
chr3 (16-136)||(7245096-7245217)
chr3 (16-141)||(51696522-51696648)
chr3 (16-147)||(43568860-43568991)
chr3 (16-87)||(34694382-34694453)
chr3 (16-82)||(19454299-19454365)
chr3 (18-80)||(55207613-55207675)
chr3 (18-87)||(41803052-41803121)
chr3 (18-87)||(51402348-51402417)
chr3 (16-87)||(43476246-43476317)
chr3 (16-87)||(55385191-55385262)
chr3 (16-80)||(45101796-45101860)
chr3 (16-87)||(13896824-13896895)
chr3 (16-87)||(52570514-52570585)
chr3 (16-85)||(41577131-41577200)
chr3 (66-149)||(66833-66917)
chr3 (16-87)||(2271260-2271332)
chr3 (16-87)||(36134377-36134449)
chr3 (20-76)||(41137773-41137829)
chr3 (16-87)||(49609437-49609508)
chr3 (65-141)||(2432999-2433076)
chr3 (27-80)||(24703374-24703427)
chr3 (68-148)||(29918400-29918481)
chr3 (72-148)||(29929359-29929436)
chr3 (68-148)||(29967553-29967634)
chr3 (72-148)||(29978513-29978590)
chr3 (68-137)||(52570625-52570694)
chr3 (16-87)||(4004750-4004822)
chr3 (16-66)||(2426559-2426609)
chr3 (16-87)||(34648150-34648223)
chr3 (72-153)||(41805738-41805820)
chr3 (65-146)||(42807656-42807738)
chr3 (65-141)||(7247916-7247993)
chr3 (75-147)||(45101914-45101987)
chr3 (65-148)||(43571741-43571825)
chr3 (16-80)||(49219739-49219803)
chr3 (97-147)||(30256092-30256142)
chr3 (65-138)||(42804398-42804472)
chr3 (65-141)||(11380381-11380458)
chr3 (65-141)||(41579780-41579857)
chr3 (67-146)||(28611158-28611238)
chr3 (68-141)||(52567703-52567777)
chr3 (65-141)||(19454381-19454458)
chr3 (68-140)||(41802939-41803012)
chr3 (70-138)||(55205280-55205349)
chr3 (20-87)||(20366246-20366313)
chr3 (90-141)||(41577015-41577066)
chr3 (19-78)||(46347672-46347731)
chr3 (68-138)||(55207722-55207793)
chr3 (77-138)||(6489276-6489338)
chr3 (65-138)||(6506007-6506081)
chr3 (23-53)||(18436767-18436797)
chr3 (65-138)||(46344880-46344954)
chr3 (18-82)||(46402415-46402483)
chr3 (68-141)||(55267381-55267455)
chr3 (65-141)||(23443162-23443239)
chr3 (102-150)||(7837523-7837571)
chr3 (90-138)||(51402480-51402528)
[»] chr2 (45 HSPs)
chr2 (16-139)||(2920464-2920588)
chr2 (16-87)||(24512221-24512292)
chr2 (16-141)||(16580485-16580611)
chr2 (67-150)||(2917614-2917698)
chr2 (18-87)||(41500184-41500253)
chr2 (16-80)||(43491170-43491234)
chr2 (16-79)||(40679545-40679608)
chr2 (65-138)||(41181380-41181454)
chr2 (16-83)||(29093779-29093843)
chr2 (67-147)||(45475374-45475455)
chr2 (16-87)||(39393091-39393162)
chr2 (16-86)||(2648172-2648242)
chr2 (67-146)||(19187281-19187361)
chr2 (67-141)||(19186687-19186762)
chr2 (22-80)||(10365746-10365804)
chr2 (68-141)||(24607627-24607701)
chr2 (65-141)||(41052621-41052698)
chr2 (16-79)||(26858175-26858238)
chr2 (16-85)||(34638196-34638262)
chr2 (65-141)||(25184885-25184962)
chr2 (67-136)||(34921817-34921886)
chr2 (65-141)||(35493397-35493474)
chr2 (71-131)||(43493319-43493380)
chr2 (67-147)||(45479852-45479933)
chr2 (67-138)||(12905492-12905564)
chr2 (73-139)||(34918394-34918461)
chr2 (71-141)||(43950303-43950374)
chr2 (85-135)||(40675699-40675749)
chr2 (65-141)||(1149412-1149489)
chr2 (65-149)||(23409557-23409642)
chr2 (68-132)||(7190010-7190074)
chr2 (65-140)||(41004470-41004546)
chr2 (72-146)||(8268812-8268887)
chr2 (65-138)||(9660111-9660185)
chr2 (68-138)||(23347387-23347457)
chr2 (72-141)||(28342463-28342533)
chr2 (18-82)||(28472146-28472214)
chr2 (73-138)||(41500298-41500364)
chr2 (65-141)||(1096535-1096612)
chr2 (91-144)||(2648054-2648107)
chr2 (68-141)||(23346721-23346794)
chr2 (91-136)||(24512112-24512157)
chr2 (68-136)||(35490625-35490694)
chr2 (68-136)||(41497417-41497486)
chr2 (65-136)||(41008983-41009055)
[»] chr8 (34 HSPs)
chr8 (16-87)||(18441389-18441460)
chr8 (16-86)||(41274647-41274717)
chr8 (18-87)||(41858073-41858142)
chr8 (67-150)||(18441499-18441583)
chr8 (20-87)||(26451534-26451601)
chr8 (16-82)||(3395925-3395991)
chr8 (16-82)||(22547502-22547568)
chr8 (90-148)||(7168021-7168079)
chr8 (65-141)||(34823072-34823149)
chr8 (65-136)||(3395837-3395909)
chr8 (16-75)||(24860448-24860507)
chr8 (72-141)||(18438574-18438644)
chr8 (72-149)||(4866367-4866444)
chr8 (18-87)||(42602514-42602583)
chr8 (30-82)||(38871832-38871884)
chr8 (72-141)||(41858184-41858254)
chr8 (18-82)||(37779711-37779773)
chr8 (90-139)||(38871741-38871790)
chr8 (65-141)||(39753053-39753130)
chr8 (68-146)||(42602395-42602474)
chr8 (72-141)||(41855308-41855378)
chr8 (73-141)||(5300687-5300756)
chr8 (18-87)||(15033095-15033166)
chr8 (73-137)||(43690097-43690162)
chr8 (65-141)||(45454346-45454423)
chr8 (107-147)||(51339-51379)
chr8 (65-141)||(545875-545951)
chr8 (65-140)||(22577606-22577682)
chr8 (68-138)||(39751017-39751088)
chr8 (90-141)||(40077332-40077383)
chr8 (65-134)||(38872986-38873056)
chr8 (65-141)||(5304200-5304277)
chr8 (72-135)||(28168662-28168724)
chr8 (68-132)||(34366861-34366925)
[»] chr1 (60 HSPs)
chr1 (16-87)||(29763167-29763238)
chr1 (16-87)||(42572705-42572776)
chr1 (16-82)||(14174859-14174925)
chr1 (16-82)||(27487614-27487680)
chr1 (65-149)||(35521546-35521631)
chr1 (65-149)||(41804089-41804174)
chr1 (18-80)||(49927451-49927513)
chr1 (16-71)||(26637204-26637259)
chr1 (16-85)||(6434804-6434873)
chr1 (65-141)||(6437595-6437672)
chr1 (71-147)||(13173770-13173847)
chr1 (65-149)||(46973136-46973221)
chr1 (30-87)||(49395657-49395714)
chr1 (16-72)||(13972131-13972187)
chr1 (65-148)||(19053992-19054076)
chr1 (16-78)||(49426750-49426813)
chr1 (16-82)||(44596894-44596960)
chr1 (65-141)||(13972004-13972080)
chr1 (65-141)||(46141722-46141799)
chr1 (72-151)||(36908508-36908588)
chr1 (16-87)||(13147550-13147621)
chr1 (90-136)||(35527095-35527141)
chr1 (68-141)||(49927572-49927646)
chr1 (90-146)||(26633465-26633521)
chr1 (16-80)||(29709259-29709323)
chr1 (16-76)||(51269003-51269063)
chr1 (67-137)||(25040134-25040205)
chr1 (16-87)||(29435027-29435097)
chr1 (66-147)||(14172048-14172130)
chr1 (68-141)||(49924796-49924870)
chr1 (65-141)||(18975176-18975253)
chr1 (71-148)||(19499174-19499250)
chr1 (20-68)||(4208454-4208502)
chr1 (72-147)||(29261349-29261424)
chr1 (89-141)||(36911749-36911801)
chr1 (70-136)||(1654748-1654815)
chr1 (18-87)||(19159677-19159750)
chr1 (92-147)||(36076641-36076696)
chr1 (91-146)||(42570077-42570132)
chr1 (86-136)||(4515971-4516021)
chr1 (88-146)||(7965976-7966034)
chr1 (97-147)||(7981219-7981269)
chr1 (89-147)||(36072304-36072362)
chr1 (16-71)||(36908640-36908699)
chr1 (65-141)||(11183126-11183203)
chr1 (65-141)||(23276164-23276241)
chr1 (65-133)||(35258928-35258997)
chr1 (16-53)||(41779767-41779804)
chr1 (83-147)||(1656159-1656223)
chr1 (85-141)||(1872048-1872104)
chr1 (23-87)||(24364680-24364744)
chr1 (65-132)||(27485008-27485076)
chr1 (65-138)||(8460152-8460226)
chr1 (68-141)||(94350-94423)
chr1 (65-141)||(9711707-9711784)
chr1 (86-147)||(21944458-21944519)
chr1 (68-141)||(51268907-51268980)
chr1 (67-147)||(51666696-51666777)
chr1 (16-82)||(35526983-35527053)
chr1 (68-146)||(49857908-49857985)
[»] chr7 (42 HSPs)
chr7 (16-82)||(21188374-21188440)
chr7 (18-87)||(30355189-30355258)
chr7 (65-149)||(9494862-9494947)
chr7 (16-85)||(41047833-41047902)
chr7 (19-87)||(28980123-28980191)
chr7 (16-80)||(40587722-40587786)
chr7 (16-80)||(46863292-46863356)
chr7 (65-141)||(48314614-48314690)
chr7 (16-87)||(36394886-36394957)
chr7 (16-82)||(34139930-34139996)
chr7 (68-141)||(48269621-48269694)
chr7 (16-87)||(42682048-42682119)
chr7 (67-141)||(46863402-46863477)
chr7 (65-139)||(47060869-47060944)
chr7 (16-80)||(17838711-17838776)
chr7 (72-148)||(28112775-28112852)
chr7 (20-132)||(43686859-43686972)
chr7 (65-139)||(19044236-19044311)
chr7 (65-139)||(20710325-20710400)
chr7 (65-135)||(46860457-46860528)
chr7 (72-141)||(36392065-36392135)
chr7 (16-85)||(28115480-28115549)
chr7 (16-72)||(48269710-48269766)
chr7 (65-147)||(36186528-36186611)
chr7 (67-137)||(42684221-42684292)
chr7 (16-75)||(45364168-45364227)
chr7 (68-141)||(28980232-28980306)
chr7 (68-141)||(48316319-48316393)
chr7 (67-147)||(10705182-10705263)
chr7 (65-141)||(34622439-34622516)
chr7 (72-141)||(41049252-41049321)
chr7 (90-138)||(41623897-41623945)
chr7 (65-147)||(11100503-11100586)
chr7 (68-141)||(21185559-21185633)
chr7 (72-147)||(10225906-10225983)
chr7 (67-154)||(40590549-40590637)
chr7 (18-53)||(48316259-48316294)
chr7 (65-138)||(37340245-37340319)
chr7 (71-139)||(10708332-10708401)
chr7 (65-141)||(27453650-27453727)
chr7 (74-141)||(42681934-42682002)
chr7 (90-134)||(46596843-46596887)
[»] chr4 (48 HSPs)
chr4 (16-80)||(56138313-56138377)
chr4 (16-82)||(34530743-34530809)
chr4 (16-82)||(39588125-39588191)
chr4 (16-86)||(44561278-44561348)
chr4 (65-148)||(29700358-29700442)
chr4 (16-87)||(958542-958613)
chr4 (65-147)||(34154458-34154541)
chr4 (16-82)||(34154376-34154442)
chr4 (16-87)||(42885503-42885576)
chr4 (16-82)||(51429277-51429343)
chr4 (16-82)||(56304909-56304975)
chr4 (18-82)||(6283417-6283481)
chr4 (65-151)||(4768608-4768695)
chr4 (65-147)||(21472540-21472623)
chr4 (65-140)||(49572956-49573032)
chr4 (65-147)||(51426471-51426554)
chr4 (71-147)||(958655-958732)
chr4 (19-82)||(243296-243359)
chr4 (72-146)||(37959783-37959858)
chr4 (20-86)||(1041990-1042056)
chr4 (65-141)||(44051148-44051225)
chr4 (67-151)||(44561388-44561473)
chr4 (65-147)||(955726-955809)
chr4 (18-80)||(28081519-28081582)
chr4 (97-148)||(44558633-44558684)
chr4 (95-146)||(48256650-48256701)
chr4 (85-147)||(49422077-49422139)
chr4 (30-79)||(4786296-4786345)
chr4 (67-148)||(17139559-17139640)
chr4 (18-87)||(21017951-21018023)
chr4 (66-146)||(21470838-21470919)
chr4 (34-87)||(29700268-29700321)
chr4 (98-149)||(18581385-18581436)
chr4 (18-87)||(55793974-55794047)
chr4 (72-141)||(4979980-4980050)
chr4 (98-147)||(3450104-3450153)
chr4 (18-87)||(6178056-6178129)
chr4 (18-87)||(49094138-49094211)
chr4 (72-141)||(6280797-6280867)
chr4 (23-85)||(11287531-11287593)
chr4 (65-150)||(11494475-11494561)
chr4 (90-136)||(33383750-33383796)
chr4 (18-82)||(40354548-40354616)
chr4 (97-147)||(51644563-51644613)
chr4 (76-148)||(4774645-4774717)
chr4 (65-141)||(50274700-50274777)
chr4 (66-141)||(51683200-51683276)
chr4 (65-141)||(56304817-56304893)
[»] scaffold0192 (3 HSPs)
scaffold0192 (16-87)||(18847-18918)
scaffold0192 (67-139)||(16354-16426)
scaffold0192 (65-141)||(25892-25969)
[»] chr6 (34 HSPs)
chr6 (16-82)||(29061329-29061395)
chr6 (16-80)||(12783905-12783969)
chr6 (16-78)||(29065791-29065853)
chr6 (16-78)||(29074804-29074866)
chr6 (16-78)||(29079568-29079630)
chr6 (16-78)||(29107377-29107439)
chr6 (72-148)||(13479659-13479736)
chr6 (90-147)||(32026039-32026096)
chr6 (16-80)||(13401547-13401611)
chr6 (67-154)||(23958817-23958905)
chr6 (16-82)||(32034340-32034406)
chr6 (65-136)||(34801482-34801554)
chr6 (68-136)||(2050974-2051043)
chr6 (16-80)||(17596764-17596831)
chr6 (65-141)||(29286169-29286246)
chr6 (68-125)||(12784016-12784074)
chr6 (65-141)||(18605985-18606062)
chr6 (67-126)||(23986039-23986099)
chr6 (64-138)||(7361134-7361209)
chr6 (65-147)||(17996539-17996622)
chr6 (18-86)||(30258263-30258333)
chr6 (98-147)||(18001148-18001197)
chr6 (23-60)||(26855976-26856013)
chr6 (65-148)||(32643577-32643661)
chr6 (18-87)||(6204881-6204954)
chr6 (18-87)||(11691848-11691921)
chr6 (86-149)||(26702737-26702800)
chr6 (73-138)||(26701795-26701861)
chr6 (65-141)||(2052639-2052715)
chr6 (65-141)||(6320545-6320622)
chr6 (67-156)||(24217945-24218034)
chr6 (108-141)||(25141179-25141212)
chr6 (65-132)||(29061245-29061313)
chr6 (16-52)||(34634281-34634317)
[»] scaffold0199 (1 HSPs)
scaffold0199 (16-87)||(12335-12407)
[»] scaffold0176 (1 HSPs)
scaffold0176 (16-82)||(855-921)
[»] scaffold0340 (1 HSPs)
scaffold0340 (65-135)||(1236-1307)
[»] scaffold0188 (1 HSPs)
scaffold0188 (91-147)||(27377-27433)
[»] scaffold0126 (1 HSPs)
scaffold0126 (97-147)||(15926-15976)
[»] scaffold0147 (1 HSPs)
scaffold0147 (98-147)||(885-934)
[»] scaffold1379 (1 HSPs)
scaffold1379 (68-138)||(493-564)
[»] scaffold0618 (1 HSPs)
scaffold0618 (65-138)||(3829-3902)
[»] scaffold0169 (1 HSPs)
scaffold0169 (90-138)||(1727-1775)
[»] scaffold0116 (1 HSPs)
scaffold0116 (65-132)||(11250-11318)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 91 - 252
Target Start/End: Original strand, 1401428 - 1401589
Alignment:
Q  91 aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttatatttttgatggatccatgtcgtttggacatttttacata 190  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1401428 aaaagcgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacagttttcttatatttttgatggatccatgtcgtttggacatttttacata 1401527  T
Q  191 tattagcaaatatatttaattttatttnnnnnnngagaaattatgaaagatgttataatttt 252  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  1401528 tattagcaaatatatttaattttatttaaaaaaagagaaattatgaaagatgttataatttt 1401589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 18307379 - 18307308
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  18307379 tgagatgaataatggatgagagggcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 18307308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 542738 - 542808
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  542738 tgagatgaataatggatgagagaacttctgccagatttgtagcagaagatcctcggcagttaactaccgag 542808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42865754 - 42865818
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  42865754 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcaattaactgc 42865818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 25497636 - 25497566
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  25497636 tgagatgaataatggatgagagagcttctgcctgatttgtagcagaagattctcggcagttaactaccgag 25497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 35564386 - 35564315
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||    
T  35564386 tgaggtgaataatggatgagagagcttatgccagatttgtagcagaagatcctcagcagttaactaccgagg 35564315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 3603207 - 3603281
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  3603207 tcggcagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaacaaca 3603281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 18310077 - 18310154
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| ||||||||||| |||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  18310077 tcctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaaca 18310154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 11346133 - 11346061
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  11346133 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacagttaactaccgagg 11346061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 18538391 - 18538474
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| || ||||||||||||||  ||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  18538391 tcctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatgtgtcaacaacaattttc 18538474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 20192364 - 20192293
Alignment:
Q  71 gcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||| ||| ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  20192364 gcagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaaca 20192293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 20200211 - 20200281
Alignment:
Q  72 cagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||| |||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  20200211 cagttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatgtgtcaacaaca 20200281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 35567083 - 35567156
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    |||||| ||||||||||||||| || ||||||| |||||||| ||||||||||||||| |||||||||||||||    
T  35567083 tcctcgacagttaactgccgagagagcaaaaacatattttacttgtgtgcctcagcctgatgaaatgtgtcaac 35567156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 8537291 - 8537220
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||||| |||||    
T  8537291 tgagatgaataatggatgagaggagattctggcagatttgtagcagaacatcctcggcagttaactaccgag 8537220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 34682274 - 34682191
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| |||||||||| | ||||| ||||| |||||||||| ||||  ||||||||||||||||||||||||||||| |||||    
T  34682274 tcctcgacagttaactgtcaagggagcaaaagcgtattttacttgtgaacctcagccttatgaaatgtgtcaacaacaattttc 34682191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 3600350 - 3600276
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||||  ||||||| |||||||| |||||| |||| | |||||||||||||||||||||    
T  3600350 tcggcagttaactgccgagggggcaaaaacatattttacttgtgtggctcaactttatgaaatgtgtcaacaaca 3600276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 20192464 - 20192414
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  20192464 gatgagagagcttctgccagatttgtagcagaagatcctcggcatttaact 20192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 42937206 - 42937132
Alignment:
Q  68 tcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||  |||||||    
T  42937206 tcggcagttaaccgccgatgggataaaaacgtattttacttgtgtgcctcagccttatgcaatgtggaaacaaca 42937132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 3600462 - 3600398
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||| |||||||    
T  3600462 tgagatgaataatgcatgaaagaacttctgtcagatttgtagcagaagatcctcggctgttaact 3600398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 19228705 - 19228785
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||||||||||  ||   ||||||||||| |||||| ||||||||||| |||||||||||||||| |||||    
T  19228705 tcggcagttaactgccgagggggcatttacgtattttacttgtgtgtctcagccttatcaaatgtgtcaacaacaattttc 19228785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 42537217 - 42537141
Alignment:
Q  66 cctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||| ||| |||||| |||||||||  ||||  ||||||||||| |||||||| |||||||    
T  42537217 cctcggcagttaactgccgatggggcaaaaatgtattttactcgtgtttctcagccttatcaaatgtgtgaacaaca 42537141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 1398621 - 1398538
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||| ||| ||| |||||  ||||||||| | |||| |||| ||||||| ||||||||||||||| |||||    
T  1398621 tcctcggcagttaactgtcgaaggagcaaaagtgtattttacttctgtgtctcaaccttatgtaatgtgtcaacaacaattttc 1398538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 33995206 - 33995281
Alignment:
Q  67 ctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||| |||||| | ||||  ||||||||| ||||||||||| |||||| |||| |||||||||||    
T  33995206 ctcggcagttaactgtcgaggggataaaattgtattttacttgtgtgcctcaaccttataaaatatgtcaacaaca 33995281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 25499951 - 25500028
Alignment:
Q  73 agttaactgccgaggga-caaaaacgtattttacctgtgt--gcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||  ||||| |||||||||| |||||  |||||||||||||| |||||||||||| || |||||    
T  25499951 agttaactgccgagggggcaaaagcgtattttacttgtgttcgcctcagccttatgtaatgtgtcaacaccaattttc 25500028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 1401388 - 1401425
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagattt 53  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  1401388 tgagatgaataatggatgagagagcttctgctagattt 1401425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 24053195 - 24053111
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctta 150  Q
    ||||||| |||||||||||| || |||||||||||||||  | |||| |||  |||||| | |||||||||||||| ||||||||    
T  24053195 ctcggcatttaactgccgagagaacaaaaacgtattttatttatgtgtctcgaccttatcatatgtgtcaacaacaattttctta 24053111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 19037416 - 19037489
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| ||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  19037416 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactaccgagg 19037489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 41201722 - 41201675
Alignment:
Q  87 ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtc 134  Q
    |||||||| ||||||||||  |||||||||||||||||| ||||||||    
T  41201722 ggacaaaatcgtattttactcgtgtgcctcagccttatgtaatgtgtc 41201675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 512799 - 512873
Alignment:
Q  68 tcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||||| | |||||||||| ||||| |||||   ||| |||||| ||||||||||||||||    
T  512799 tcggcagttaactgtcgaggaggcaaaaacgtactttacttgtgtttatcaaccttatcaaatgtgtcaacaaca 512873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 8702254 - 8702336
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctc-agccttatgaaatgtgtcaacaacatttt 145  Q
    ||||||||||||||||| ||||||| ||||| |||||||||| ||||| |||| || ||||| |||| ||| ||||| |||||    
T  8702254 tcctcggcagttaactgtcgagggagcaaaatcgtattttacttgtgtacctcaagtcttataaaatatgtgaacaaaatttt 8702336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 30611254 - 30611169
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttat 151  Q
    ||||| ||||||||||| ||||  |||||||| |||||||  ||||  ||||||||||| |||||||| ||||||| || ||||||    
T  30611254 ctcggtagttaactgccaagggggcaaaaacgaattttactcgtgtttctcagccttatcaaatgtgtgaacaacaattctcttat 30611169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 33993294 - 33993225
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||||||| |||||||  ||||||||||||||||  || |  |||| ||||||||||||||||||    
T  33993294 tcggcagttaacttccgagggggcaaaaacgtattttactcgtatttctcaaccttatgaaatgtgtcaa 33993225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 38968112 - 38968039
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    ||||||| |||||||| |||| ||| |||||||||||||||| | |||   ||||||||||||||||| |||||    
T  38968112 tcctcggtagttaactaccgaaggatcaaaaacgtattttacttatgtttttcagccttatgaaatgtatcaac 38968039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 7994 - 8065
Alignment:
Q  18 agatgaataatggatgaga-gagcttctgccagatttata--gcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||| || ||| ||||||||||||| ||  |||| |||||||||| |||||||| |||||    
T  7994 agatgaataatggatgtgaggagattctgccagatttgtagcgcaggagatcctcggtagttaactaccgag 8065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 7762303 - 7762367
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    ||||||||||||||||||||| |||||||||   ||||  ||||| | |||||||||| ||||||    
T  7762303 tcggcagttaactgccgaggggcaaaaacgtcaattactcgtgtggcacagccttatgtaatgtg 7762367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 7796676 - 7796604
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||| |||||||| ||||  ||||||||||  ||||  |||||||||||||| ||| ||||||||||||    
T  7796676 ctcggcagataactgccaagggggcaaaaacgtaaattactcgtgtgcctcagcctaatgcaatgtgtcaaca 7796604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 57)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 7245217 - 7245096
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcc 114  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| || | || ||  ||||||||||||||| ||||||||    
T  7245217 tgagatgaataatggatgagagagcttctgtcagatttgtagcagaagatactcggcagttaattgtctagagggtaaaaacgtattttacttgtgtgcc 7245118  T
Q  115 tcagccttatgaaatgtgtcaa 136  Q
    ||| ||||||||||||||||||    
T  7245117 tcaaccttatgaaatgtgtcaa 7245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 51696522 - 51696648
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcc 114  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||| ||| |||||| |||  ||||  |||||||    
T  51696522 tgagatgaataatggatgagagagcttctgccagatttgcagcagaagatcctcggcagttaactaccgagggggcaaaaaagtaaattactcgtgtgcc 51696621  T
Q  115 tcagccttatgaaatgtgtcaacaaca 141  Q
     ||||||||| ||||||| ||||||||    
T  51696622 acagccttatcaaatgtggcaacaaca 51696648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 43568991 - 43568860
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcct 115  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||| |  | || ||||| ||||||||||  ||||  ||    
T  43568991 tgagatgaataatggatgagagagcttctgtcagatttgtaacagaagatcctcagcagttaactactcaagggcaaaagcgtattttactcgtgtttct 43568892  T
Q  116 cagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| |||||||||||||||| |||||    
T  43568891 cagccttataaaatgtgtcaacaacaattttc 43568860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34694382 - 34694453
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  34694382 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactcccgagg 34694453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19454299 - 19454365
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  19454299 tgagatgaataatggatgagagagcttctgccagatttgtagtagaagatcctcggcagttaactgc 19454365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 55207613 - 55207675
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55207613 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 55207675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 41803121 - 41803052
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  41803121 agatgaataatggatgagagagcttctgccagatttgtagcaaaagatcctcggcagttaactaccgagg 41803052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 51402348 - 51402417
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  51402348 agatgaataatggatgagagagcttctgacagatttgtagcagaagatcctcggcagttaactaccgagg 51402417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 43476317 - 43476246
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||    
T  43476317 tgagatgaataatggatgagagagcttctgtcagatttgtagcaaaagatcctcggcagttaactaccgagg 43476246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 55385262 - 55385191
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  55385262 tgagattaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactaccgagg 55385191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 45101796 - 45101860
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45101796 tgagatgaataatatatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 45101860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 13896824 - 13896895
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||||||| ||||||    
T  13896824 tgagatgaataatggatgagagagcttctgccagatttgtagtagaaaatcttcggcagttaactaccgagg 13896895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 52570514 - 52570585
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  52570514 tgagatgaataatgaatgagagagtttctgccagatttgtagtagaagatcctcggcagttaactaccgagg 52570585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 41577200 - 41577131
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||| ||||    
T  41577200 tgagatggataatggatgagagagcttctgcaagatttgtagcagaagatcctcggcagtttactaccga 41577131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 66917 - 66833
Alignment:
Q  66 cctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    |||||||||||||||||||||||  ||||| ||||||||||  ||||| ||||||||||| |||||||||||||||| |||||||    
T  66917 cctcggcagttaactgccgagggggcaaaagcgtattttactcgtgtgtctcagccttatcaaatgtgtcaacaacagttttctt 66833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 2271260 - 2271332
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  2271260 tgagatgaattatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaactcccgagg 2271332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 36134449 - 36134377
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  36134449 tgagatgaataatggataagaggagattctgccagatttgtagcagaagatcctcggcagttaactcccgagg 36134377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 41137829 - 41137773
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagtt 76  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41137829 atgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagtt 41137773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 49609508 - 49609437
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||| || ||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||    
T  49609508 tgagatgaataatgaataagagagcttatgccagatttgtagcagaagttcctcggcagttaactaccgagg 49609437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 2432999 - 2433076
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| ||||||||||||||||| | |||| ||||||||||  |||||||||||||||||| |||||||||||||||    
T  2432999 tcctcgacagttaactgccgaggggataaaagcgtattttactcgtgtgcctcagccttatgcaatgtgtcaacaaca 2433076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 24703374 - 24703427
Alignment:
Q  27 atggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  24703374 atggatgagagagcttctgccagatttgtagcagaagatcatcggcagttaact 24703427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 29918400 - 29918481
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaa-cgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||||| ||||||||| | |||| |||||||||| | ||||||||||||||||||||| ||||||||||| ||||||    
T  29918400 tcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaatatgtcaacaacaattttct 29918481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 29929436 - 29929359
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    |||||||||| ||||||| ||||| | |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  29929436 cagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttct 29929359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 29967553 - 29967634
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaa-cgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||||| ||||||||| | |||| |||||||||| | ||||||||||||||||||||| ||||||||||| ||||||    
T  29967553 tcggcagttaattgccgaggggccaaaatcgtattttacttatgtgcctcagccttatgaaatatgtcaacaacaattttct 29967634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 29978590 - 29978513
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    |||||||||| ||||||| ||||| | |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  29978590 cagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttct 29978513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 52570625 - 52570694
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    |||||||||||||||||||||  ||||||||||||||   |||||||||||||||||| |||||||||||    
T  52570625 tcggcagttaactgccgaggggaaaaaacgtattttaatcgtgtgcctcagccttatgcaatgtgtcaac 52570694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 4004750 - 4004822
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| | ||||||    
T  4004750 tgagatgaataatggatgagaggagattctgccaggtttgtagcagaagatcctcggcagttaagtaccgagg 4004822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 2426609 - 2426559
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatc 66  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  2426609 tgagatgaataatgaatgagagagcttctgccaaatttatagcagaagatc 2426559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 34648150 - 34648223
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccaga--tttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||| ||||||||| ||| || ||||||||||    
T  34648150 tgagatgaataatggatgagagagcttctgccagaattttgtagcataagatcctcagcaatttactgccgagg 34648223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 153
Target Start/End: Original strand, 41805738 - 41805820
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttatat 153  Q
    |||||||||||||||| | ||||||||||  |||| ||||||||||||||||||| ||||||||| ||||| || ||||||||    
T  41805738 cagttaactgccgaggaagcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcatcaacaattctcttatat 41805820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 42807656 - 42807738
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    |||||| |||||||||||||||| | |||||| ||||||||  ||||||| ||||||||||||||||||| ||||||| ||||    
T  42807656 tcctcgacagttaactgccgaggaggcaaaaatgtattttatttgtgtgcatcagccttatgaaatgtgttaacaacaatttt 42807738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 7247916 - 7247993
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||||||  ||||| |||||||||   |||||||||||||||||  |||||||||||||||    
T  7247916 tcctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaacaaca 7247993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 45101914 - 45101987
Alignment:
Q  75 ttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||| | ||||||||||||||| | ||||||||| |||||||||||||||| |||||| |||||    
T  45101914 ttaactgccgaggggataaaaacgtattttacttatgtgcctcaaccttatgaaatgtgtcgacaacaattttc 45101987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 43571741 - 43571825
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||| ||||||||||||||||||  ||||||| |||||||| ||||| ||| | ||||||| ||||||||||||||| ||||||    
T  43571741 tcctcagcagttaactgccgagggggcaaaaacatattttacttgtgtacctgaaccttatgtaatgtgtcaacaacaattttct 43571825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 49219739 - 49219803
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||| ||||||||||| || |||| ||||||||||||||||  ||||||||    
T  49219739 tgagatgaataatggatgggagagcttctgtcaaatttgtagcagaagatcctcgatagttaact 49219803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 30256092 - 30256142
Alignment:
Q  97 gtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  30256092 gtattttacttgtgtgcctcagctttatgaaatgtgtcaacaacaattttc 30256142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 42804472 - 42804398
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||  ||||||  | |||  ||||||||| ||||||||||||||||||||||||||||||||    
T  42804472 tcctcggcagttaactatcgagggggctaaagtgtattttacttgtgtgcctcagccttatgaaatgtgtcaaca 42804398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 11380458 - 11380381
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| ||| ||||||||||||||||  ||||  |||||||| |  ||||||||||||||||    
T  11380458 tcctcggcagttaactgccgaaggggcaaaaacgtattttactcgtgtttctcagcctaaccaaatgtgtcaacaaca 11380381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 41579780 - 41579857
Alignment:
Q  65 tcctcggcagttaactgccgagggacaaaaa-cgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||| ||| ||||||||||||||  ||||| |||||||||| | ||||||||||||||||| || ||||||||||||    
T  41579780 tcctcagcaattaactgccgagggggaaaaatcgtattttacttatgtgcctcagccttatgcaacgtgtcaacaaca 41579857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 28611158 - 28611238
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||||||||||||||||||||  |||||   |||||||| |||||| |||||||||||||||||||| || |||| ||||    
T  28611158 ctcggcagttaactgccgagggggcaaaattatattttacttgtgtgtctcagccttatgaaatgtgtaaagaacaatttt 28611238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 52567777 - 52567703
Alignment:
Q  68 tcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||  | ||||| ||||||||||  |||||||||||||||||| || || |||||||||    
T  52567777 tcggcagttaactgccgagaaggcaaaatcgtattttactcgtgtgcctcagccttatgcaacgtatcaacaaca 52567703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 19454381 - 19454458
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||| |||||||||||||||| || ||||| ||||||||||  ||||| |||| ||||||| ||||| |||||||||    
T  19454381 tcctcagcagttaactgccgagagggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtatcaacaaca 19454458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 41803012 - 41802939
Alignment:
Q  68 tcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaac 140  Q
    ||||||||||||||||||| || ||||||||||||||||  || |  ||||||| ||||||||||||| |||||    
T  41803012 tcggcagttaactgccgagtgggcaaaaacgtattttactcgtatttctcagccatatgaaatgtgtcgacaac 41802939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 55205349 - 55205280
Alignment:
Q  70 ggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||||| |||||||||||  ||||   | ||||||||||||||| ||||||||||||    
T  55205349 ggcagttaactgccgaggggacaaaaacgtaaattactcatatgcctcagccttatgcaatgtgtcaaca 55205280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 20366313 - 20366246
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||| |||||| ||||||||  |||||| ||| |||||||||||| || |||||| ||||||    
T  20366313 atgaataatgaatgagaaagcttctggtagatttgtagtagaagatcctcgacaattaactaccgagg 20366246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 41577066 - 41577015
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||  ||| |  ||||||||||||||||||||||||||||    
T  41577066 caaaaacgtattttatttgtatttctcagccttatgaaatgtgtcaacaaca 41577015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 46347672 - 46347731
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||| |||||||||||||| |||| || ||||| |||||||||||| ||| |||||||    
T  46347672 gatgaacaatggatgagagagtttctccctgatttgtagcagaagatcttcgacagttaa 46347731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 55207722 - 55207793
Alignment:
Q  68 tcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||||||||||||| ||| |||||  |||||||||  ||||  ||||||| |||||||||||||||||    
T  55207722 tcggcagttaactgccgatggggcaaaagagtattttactcgtgtttctcagccatatgaaatgtgtcaaca 55207793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 6489338 - 6489276
Alignment:
Q  77 aactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||  ||||||||||  |||| ||||||||||| ||||||| ||||||||||||    
T  6489338 aactgccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaaca 6489276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 6506007 - 6506081
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||| ||||||||||| | ||||| |||||||||||  ||||  |||||||||||||||||  ||||||||||||    
T  6506007 tccttggcagttaacttctgaggggacaaaaacgtaaattactcgtgtgcctcagccttatacaatgtgtcaaca 6506081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 18436797 - 18436767
Alignment:
Q  23 aataatggatgagagagcttctgccagattt 53  Q
    |||||||||||||||||||||||||||||||    
T  18436797 aataatggatgagagagcttctgccagattt 18436767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 46344954 - 46344880
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||| |||||||||||||||||  ||||||  |||||||| ||||||||||| ||||||  ||| ||||||||    
T  46344954 tcctcgacagttaactgccgagggggcaaaaaaatattttacttgtgtgcctcaaccttatccaatttgtcaaca 46344880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 46402483 - 46402415
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgc 82  Q
    |||| ||||||||||||||| || |||||||||||||   |  ||||||||||||||||||||||||||    
T  46402483 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactgc 46402415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 55267455 - 55267381
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||||||  ||||||||||  ||||  ||||| |||||||||||| || ||||||||||||    
T  55267455 tcggcagttaactgtcgagggggcaaaaacgtaaattactcgtgtgtctcagccttatgcaacgtgtcaacaaca 55267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 23443162 - 23443239
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| |||  |||| ||||||||||  ||||| | ||||||||| |||||||  |||||||    
T  23443162 tcctcggcagttaactgccgagggggtaaaatcgtattttactagtgtgtcacagccttatcaaatgtgggaacaaca 23443239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 7837571 - 7837523
Alignment:
Q  102 ttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctta 150  Q
    |||| |||||| |||||||||||| ||||||||||||||| || |||||    
T  7837571 ttacttgtgtgtctcagccttatgcaatgtgtcaacaacaattctctta 7837523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 51402480 - 51402528
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||  ||||  ||||||| |||||||||||||||||    
T  51402480 caaaaacgtattttactcgtgtttctcagccatatgaaatgtgtcaaca 51402528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 2920464 - 2920588
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcc 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||   ||||| | |||||||| | ||| |     
T  2920464 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgaggttgcaaaatcatattttacttatgtaca 2920563  T
Q  115 tcagccttatgaaatgtgtcaacaa 139  Q
    |||  ||||| ||||||||||||||    
T  2920564 tcaatcttattaaatgtgtcaacaa 2920588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 24512292 - 24512221
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  24512292 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 24512221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 16580611 - 16580485
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcc 114  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||| ||||| | || ||||||| ||||| | |||||| |||||||||  ||||| |    
T  16580611 tgagatgaataatggatgagagaacttttgccagatttgtagcagaaaatccttgacaattaactgtcgaggaggcaaaaatgtattttactcgtgtgtc 16580512  T
Q  115 tcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||| |||||||||||||||    
T  16580511 tcagccttatgcaatgtgtcaacaaca 16580485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 2917698 - 2917614
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctta 150  Q
    ||||||||||||||||||||||  |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||    
T  2917698 ctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaaatgtgtcaacaacaattttctta 2917614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41500184 - 41500253
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  41500184 agatgaataatggatgagagagcttatgccagatttgtagcagaagatcctcggcagttaactaccgagg 41500253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 43491234 - 43491170
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  43491234 tgagatgaataatggatgagagagcttctgccagatttataacagaagattctcggcagttaact 43491170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 40679545 - 40679608
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||    
T  40679545 tgagatgaataatggatgagagaggttcttccagatttgtagcagaagatcctcggcagttaac 40679608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 41181454 - 41181380
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||| ||||||||||||    
T  41181454 tcctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgtcaaca 41181380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 29093779 - 29093843
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgcc 83  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29093779 tgagatgaataat---tgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgcc 29093843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 45475455 - 45475374
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||||||  ||||| |||||||||| |||||| ||||||||||||||||||||||||| || |||||    
T  45475455 ctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtgtctcagccttatgaaatgtgtcaacatcaattttc 45475374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 39393162 - 39393091
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||  ||||||| ||| |||||||||||| ||||||||| ||||||    
T  39393162 tgagatgaataatggatgagagagcttctatcagatttgtagtagaagatcctcgacagttaactaccgagg 39393091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 2648242 - 2648172
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    ||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||| |||||| |||||    
T  2648242 tgagatgaataattgatgagagagtttctgccagatttgtagcagaagatcatcggcaattaactaccgag 2648172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 19187281 - 19187361
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||| ||||||||||||| |||| | ||||||| ||||    
T  19187281 ctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgatatgtctgaacaacaatttt 19187361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 19186762 - 19186687
Alignment:
Q  67 ctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||| |||||||| |||  ||||||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  19186762 ctcggcagtttactgccgatggggtaaaaacgtattttacttgtgtgtctcagccttatgatatgtgtcaacaaca 19186687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 10365746 - 10365804
Alignment:
Q  22 gaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  10365746 gaataatggatgagagagcttatgccagatttgtagcaaaagatcctcggcatttaact 10365804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 24607627 - 24607701
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaa-cgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||| |||||  ||||| ||||  |||||||||||||||||||||||| |||||||||||||||    
T  24607627 tcggcagttaactgctgagggggaaaaaacgtaaattacctgtgtgcctcagccttatgcaatgtgtcaacaaca 24607701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 41052698 - 41052621
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||| |||||||||||||| |||||||||||  |||| ||||||| ||||||||||| ||| |||||||||||    
T  41052698 tcctcggcaattaactgccgaggggacaaaaacgtaaattacttgtgtgcatcagccttatgcaatatgtcaacaaca 41052621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 26858238 - 26858175
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    ||||||||||||| |||||||||  ||||| || |||| |||||||||||||||||||||||||    
T  26858238 tgagatgaataattgatgagagaatttctgtcacatttgtagcagaagatcctcggcagttaac 26858175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 34638262 - 34638196
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||||||| || |||||| ||||    
T  34638262 tgagatgaataatggatgagagagcttct---agatttgtagcagaagatcctcgacaattaactaccga 34638196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 25184885 - 25184962
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| ||||||||||| |||||  ||||||||||||||||  |||||||||| ||||||| ||| |||||||||||    
T  25184885 tcctcgacagttaactgctgagggggcaaaaacgtattttactcgtgtgcctcaaccttatgcaatctgtcaacaaca 25184962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 34921817 - 34921886
Alignment:
Q  67 ctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||||||||||| ||| ||| ||||||||||||||||  ||||  ||| |||||||||||||||||||    
T  34921817 ctcggcagttaactaccggggggcaaaaacgtattttactcgtgtttctctgccttatgaaatgtgtcaa 34921886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 35493397 - 35493474
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||| |||||||  ||||| ||||||||||  ||||| |||| ||||||| |||||||||||||||    
T  35493397 tcctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtgtcaacaaca 35493474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 43493319 - 43493380
Alignment:
Q  71 gcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgt 131  Q
    ||||||||||||||||||  |||||||||||||||| |||||| |||||||||||| |||||    
T  43493319 gcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgtaatgt 43493380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 45479852 - 45479933
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||||||||| || ||||| ||||||||||   |||  || ||||||||||||||||||||||||| |||||    
T  45479852 ctcggcagttaactgccgagagagcaaaatcgtattttactcatgtttctgagccttatgaaatgtgtcaacaacaattttc 45479933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 12905564 - 12905492
Alignment:
Q  67 ctcggcagttaactgccgagggacaaaaa-cgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||||||||  ||||| ||||||||||   |||  |||||||||||||||||||||||||    
T  12905564 ctcggcagttaactgccgaggggaaaaaagcgtattttactcttgtttctcagccttatgaaatgtgtcaaca 12905492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 34918461 - 34918394
Alignment:
Q  73 agttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    ||||||||| ||||||  |||||||||||| ||| |||||||||||||||||||| |||| |||||||    
T  34918461 agttaactgacgagggggcaaaaacgtattgtacttgtgtgcctcagccttatgagatgtatcaacaa 34918394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 43950303 - 43950374
Alignment:
Q  71 gcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||  |||||| |||||||||  ||||  ||||||||||| ||||||||||||||||    
T  43950303 gcagttaactgccgagggggcaaaaatgtattttactcgtgtttctcagccttatcaaatgtgtcaacaaca 43950374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 40675749 - 40675699
Alignment:
Q  85 agggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtca 135  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||| |||||    
T  40675749 agggacaaaaacgtattttacttgtgtgtctcaaccttatgaaatatgtca 40675699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 1149489 - 1149412
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||||||| ||||| ||||||||||  ||||| | || |||||| |||||||  |||||||    
T  1149489 tcctcggcagttaactgccgagggagcaaaatcgtattttactagtgtggcacaaccttatcaaatgtgggaacaaca 1149412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 23409557 - 23409642
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    ||||||||| |||||||||||| || ||||  ||||||||||  |||||| ||||||||||| || ||||| |||||| |||||||    
T  23409557 tcctcggcaattaactgccgagagggcaaacgcgtattttactagtgtgcatcagccttatgtaacgtgtccacaacaattttctt 23409642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 7190010 - 7190074
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    ||||||||||||||||||||| |||||||||| |||||  ||||| | || ||||||| ||||||    
T  7190010 tcggcagttaactgccgaggggcaaaaacgtaatttactcgtgtggcacaaccttatgtaatgtg 7190074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 41004546 - 41004470
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaac 140  Q
    ||||||||||||||||||||||| | ||||||||||  ||||  || ||| ||||||||||  ||||||||||||||    
T  41004546 tcctcggcagttaactgccgaggaagcaaaaacgtaaattactcgtatgcatcagccttatacaatgtgtcaacaac 41004470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 8268812 - 8268887
Alignment:
Q  72 cagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||||||||||||||| |||||| ||||||||||   ||| | |||| ||||| |||||||||||||||| ||||    
T  8268812 cagttaactgccgaggggacaaaatcgtattttactaatgtacgtcagtcttataaaatgtgtcaacaacaatttt 8268887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 9660111 - 9660185
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||||||||||||||||| || |||||| |||  ||||  |||| ||||||| ||||| ||||||||||||    
T  9660111 tcctcggcagttaactgccgagagggcaaaaaagtaaattactcgtgtacctcagctttatgcaatgtgtcaaca 9660185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 23347387 - 23347457
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||||||||||||| || |||||||||  |||||  ||||| | ||||||||| |||||||| ||||    
T  23347387 tcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacagccttatcaaatgtgtaaaca 23347457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 28342533 - 28342463
Alignment:
Q  72 cagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||| ||||||||||  |||| | |||| || ||||||||| |||||||||||||||    
T  28342533 cagttaactgccgaaggggcaaaaacgtaaattacttatgtgtcttagccttatgcaatgtgtcaacaaca 28342463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 28472214 - 28472146
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||| || |||||||||||||   |  ||||||||||||| ||||||||||||    
T  28472214 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcagcagttaactgc 28472146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 41500298 - 41500364
Alignment:
Q  73 agttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||||||||  ||||| ||||||||||  ||||  ||||||| |||||||||||||||||    
T  41500298 agttaactgccgagggggcaaaagcgtattttactcgtgtttctcagccatatgaaatgtgtcaaca 41500364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 1096612 - 1096535
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||| ||||| ||| ||||| ||||||||||  ||||||| || |||||| |||||||  |||||||    
T  1096612 tcctcggcagttaacagccgagggggcaaaatcgtattttactagtgtgccacaaccttatcaaatgtggaaacaaca 1096535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 2648107 - 2648054
Alignment:
Q  91 aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattt 144  Q
    |||||||||||||||  ||||  |||| ||||||||||||| ||||||||||||    
T  2648107 aaaaacgtattttactcgtgtttctcaaccttatgaaatgtctcaacaacattt 2648054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 23346794 - 23346721
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||| || |||||||||  |||||  ||||| | || |||||| |||||||| |||||||    
T  23346794 tcggcagttaactgccgaagggcaaaaacgtcatttactcgtgtggcacaaccttatcaaatgtgtaaacaaca 23346721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 24512157 - 24512112
Alignment:
Q  91 aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||||||||| |||||  ||||||| |||||||||||||||    
T  24512157 aaaaacgtattttacttgtgtttctcagccatatgaaatgtgtcaa 24512112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 35490694 - 35490625
Alignment:
Q  68 tcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||||||||| | ||||| | |||||| |||||||||  ||||| |||||||||||| ||||||||||    
T  35490694 tcggcagttaaccgtcgaggaggcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgtcaa 35490625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 41497486 - 41497417
Alignment:
Q  68 tcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||||| || ||||| | ||||||||||  ||||  |||||||||||||||||| ||||||||||    
T  41497486 tcggcagttaagtgtcgaggtggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaa 41497417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 41008983 - 41009055
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||||||||||||||||| | ||||||||||  ||||  ||||| ||| | ||||| |||||||||||    
T  41008983 tcctcggcagttaactgccgaggaggcaaaaacgtaaattactcgtgtgtctcggtcttatcaaatgtgtcaa 41009055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 18441389 - 18441460
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  18441389 tgagatgaataatggatgagagagtttctgccagatttgtagcagaagatcctcggcagttaactgccgagg 18441460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 41274717 - 41274647
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||    
T  41274717 tgagatgaataatggatgagagagcttctgccagatttatagtagaagattctcggcagttaactaccgag 41274647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 41858073 - 41858142
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  41858073 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgacagttaactcccgagg 41858142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 18441499 - 18441583
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctta 150  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||    
T  18441499 ctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaattctctta 18441583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 26451601 - 26451534
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  26451601 atgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 26451534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 3395991 - 3395925
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  3395991 tgagatgaataatggatgagagagtttctgccatatttgtagcagaagatcctcggcagttaactgc 3395925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 22547568 - 22547502
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  22547568 tgagatgaataattgatgagagagcttctgccagatttgtagtagaagatcctcggtagttaactgc 22547502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 7168079 - 7168021
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  7168079 caaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttct 7168021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 34823072 - 34823149
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| ||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||    
T  34823072 tcctcgacagttaactgccgagaggacaaaaacgtatattacgtgtgtgcctcaaccttatacaatgtgtcaacaaca 34823149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 3395909 - 3395837
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||||||||||||||| |||||  ||||||| |||||||| ||||||||||| ||||||||||||||||||    
T  3395909 tcctcggcagttaactgctgagggggcaaaaacatattttacttgtgtgcctcaaccttatgaaatgtgtcaa 3395837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 24860507 - 24860448
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagt 75  Q
    ||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||    
T  24860507 tgagatgaataatagatgagagagcttctgtcaaatttatagcagaagatcctccgcagt 24860448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 18438644 - 18438574
Alignment:
Q  72 cagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| ||| ||||| |||||||||| ||||||| ||||||||||| |||||||||||||||    
T  18438644 cagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatgtgtcaacaaca 18438574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 4866444 - 4866367
Alignment:
Q  72 cagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    |||||||||||||||||||||   ||||||||||  ||||| ||||||||||||| |||||| ||||||| |||||||    
T  4866444 cagttaactgccgagggacaatttcgtattttactcgtgtgtctcagccttatgatatgtgtgaacaacaattttctt 4866367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 42602583 - 42602514
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||| | ||| || ||||||| || ||||||||||||||||||||||| ||||||    
T  42602583 agatgaataatggatgagacaacttatgtcagatttgtatcagaagatcctcggcagttaactaccgagg 42602514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 38871884 - 38871832
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  38871884 gatgagagagctcctgccagatttgtagcagaagatccttggcagttaactgc 38871832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 41858184 - 41858254
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||  ||||||||||||||||  ||||  ||||||| ||||||||||||||||||||    
T  41858184 cagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaatgtgtcaacaaca 41858254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 37779773 - 37779711
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||  |||||| ||||||| |||||||| ||||||| |||||||||||    
T  37779773 agatgaataatggatgagag--cttctgtcagatttgtagcagaatatcctcgacagttaactgc 37779711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 38871790 - 38871741
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||||    
T  38871790 caaaaacgtattttacttgtgtgcctcaatcttatgaaatgtgtcaacaa 38871741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 39753053 - 39753130
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| |||||||||| |||  ||||  |||||||| ||||||||  |||||||||||||||    
T  39753053 tcctcggcagttaactgccgatgggacaaaaatgtaaattactcgtgtgcctgagccttatacaatgtgtcaacaaca 39753130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 42602474 - 42602395
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||||||||||||||||  || |||||| |||||||||  ||||  ||||||| ||||||| |||||||||||||||||    
T  42602474 tcggcagttaactgccgatagaacaaaaatgtattttactcgtgtttctcagccatatgaaacgtgtcaacaacattttt 42602395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 41855378 - 41855308
Alignment:
Q  72 cagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||| | ||||||||||||||||   |||  ||||||| ||||||||||||||||||||    
T  41855378 cagttaactgccgaggaggcaaaaacgtattttactcatgtttctcagccatatgaaatgtgtcaacaaca 41855308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 5300756 - 5300687
Alignment:
Q  73 agttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||| |||||| |||||||||||||||||  ||||  |||| |||||| ||||||||||||||||    
T  5300756 agttaactgtcgaggggacaaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaaca 5300687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 15033095 - 15033166
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagatttatag--cagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||| || ||||||||||||| |||  |||| |||||||||||||||||| ||||||    
T  15033095 agatgaataatggatgagaggagattctgccagatttgtaggtcaga-gatcctcggcagttaactaccgagg 15033166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 43690097 - 43690162
Alignment:
Q  73 agttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    |||||||| ||||| || |||||||||||||||| ||| | | |||||||||||||||||||||||    
T  43690097 agttaactaccgagagagcaaaaacgtattttacttgtatacttcagccttatgaaatgtgtcaac 43690162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 45454423 - 45454346
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||||| | ||||| ||||||||||  ||||||| ||| ||||| |||||||  |||||||    
T  45454423 tcctcggcagttaactgccgaggaggcaaaatcgtattttactagtgtgccacagtcttatcaaatgtgggaacaaca 45454346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 51379 - 51339
Alignment:
Q  107 tgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  51379 tgtgtgcctgagccttatgaaatgtgtcaacaacaattttc 51339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 545951 - 545875
Alignment:
Q  65 tcctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||| ||| ||||||||||||  |||||   |||| | ||||||||| |||||||| |||||||    
T  545951 tcctcggcagttaactgtcgaaggacaaaaacgtcatttacacatgtggcacagccttatcaaatgtgtaaacaaca 545875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 22577682 - 22577606
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaac 140  Q
    ||||| ||| ||||||||||||||| |||||||||||||||  ||||||  || ||||| |||||||| ||||||||    
T  22577682 tcctcagcaattaactgccgagggaacaaaaacgtattttatttgtgtgtatctgccttgtgaaatgtatcaacaac 22577606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 39751088 - 39751017
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||| |||| ||||  ||||||||||||||||  |||||||||| | ||||| ||||||||||||    
T  39751088 tcggcagttaattgccaagggggcaaaaacgtattttactcgtgtgcctcaacattatgcaatgtgtcaaca 39751017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 40077332 - 40077383
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||  ||||  ||||||||||| ||||||||||||||||    
T  40077332 caaaaacgtattttactcgtgtttctcagccttatcaaatgtgtcaacaaca 40077383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 38872986 - 38873056
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtc 134  Q
    ||||||| ||||||||| |||||| |||||||  | |||||| ||||||| ||||||||||| ||||||||    
T  38872986 tcctcggtagttaactgacgaggggacaaaaatattttttacttgtgtgcatcagccttatgcaatgtgtc 38873056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 5304200 - 5304277
Alignment:
Q  65 tcctcggcagttaactgccgagggac-aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||| |||||||||||||||||||   |||||||||||||||  ||||   |||||||||| |||||||| |||||||    
T  5304200 tccttggcagttaactgccgagggggtaaaaacgtattttactcgtgtttttcagccttatcaaatgtgtgaacaaca 5304277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 28168662 - 28168724
Alignment:
Q  72 cagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtca 135  Q
    |||||||||||||||| | ||||||| |||||||| ||||  ||||| |||||||||||||||||    
T  28168662 cagttaactgccgaggaggcaaaaacatattttacttgtg--cctcatccttatgaaatgtgtca 28168724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 34366925 - 34366861
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    |||||||||||||| |||||| |||||| || ||||||  ||||| | |||||||||| ||||||    
T  34366925 tcggcagttaactgacgaggggcaaaaaggtcttttactcgtgtggcacagccttatgtaatgtg 34366861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 60)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 29763167 - 29763238
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29763167 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 29763238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 42572705 - 42572776
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  42572705 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 42572776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 14174859 - 14174925
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14174859 tgagatgaataatggatgagagagcttctgccagatttttagcagaagatcctcggcagttaactgc 14174925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 27487614 - 27487680
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27487614 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 27487680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 35521631 - 35521546
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    |||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  35521631 tcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttctt 35521546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 41804089 - 41804174
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    ||||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  41804089 tcctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttctt 41804174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 49927451 - 49927513
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  49927451 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaact 49927513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 26637204 - 26637259
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcgg 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26637204 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcgg 26637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 6434873 - 6434804
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||| ||||    
T  6434873 tgagatgaataatggatgagagtgcttctaccagatttgtagcagaagatccttggcagttaactaccga 6434804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 6437595 - 6437672
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||||| || ||||| |||||||||| ||||||||||||| ||||| |||||||||||||||    
T  6437595 tcctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaacaaca 6437672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 13173847 - 13173770
Alignment:
Q  71 gcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||  |||||  ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13173847 gcagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 13173770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 46973221 - 46973136
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    ||||||||||||||||||| ||||  ||||| |||||||||| |||||| |||||||| ||||||||||||||||||| |||||||    
T  46973221 tcctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatgtgtcaacaacaattttctt 46973136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 49395714 - 49395657
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  49395714 gatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 49395657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13972187 - 13972131
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggc 72  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  13972187 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctcggc 13972131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 19054076 - 19053992
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||||||||||| ||||||  ||||||||||||||||  ||||  |||||||||||||||||||||||||||| ||||||    
T  19054076 tcctcggcagttaactgtcgagggggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaattttct 19053992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 49426813 - 49426750
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  49426813 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcggcagttaa 49426750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 44596960 - 44596894
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||||| ||| ||||||||||||    
T  44596960 tgagatgaataatggatgagagagtttctgccaaatttgtagcagaagatactcagcagttaactgc 44596894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 13972080 - 13972004
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||| ||||||||| ||| |||||||||||||||| |||||  ||||||||||||||||||||||||||||    
T  13972080 tcctcggcagt-aactgccgaaggggcaaaaacgtattttacttgtgtttctcagccttatgaaatgtgtcaacaaca 13972004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 46141799 - 46141722
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||||| || ||||| |||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  46141799 tcctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaatatgtcaacaaca 46141722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 36908588 - 36908508
Alignment:
Q  72 cagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttat 151  Q
    |||||||||||||||| | |||||| ||||||||| ||||||||||| |||||| ||||||||||||| || |||||||||    
T  36908588 cagttaactgccgaggaggcaaaaatgtattttacttgtgtgcctcatccttataaaatgtgtcaacatcaattttcttat 36908508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 13147621 - 13147550
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||| || | |||||||| |||||||||||| ||| |||||||||| |||||    
T  13147621 tgagatgaataatggatgagagagtttttaccagatttgtagcagaagatcatcgacagttaactgtcgagg 13147550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 35527095 - 35527141
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  35527095 caaaaacgtattttacttgtgtgcctcagccttatgaaatgtgtcaa 35527141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 49927572 - 49927646
Alignment:
Q  68 tcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||  ||| ||| ||||||||||||||||||||    
T  49927572 tcggcagttaactgccgaggggacaaaaacgtattttactcgtgtttctcggccatatgaaatgtgtcaacaaca 49927646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 26633521 - 26633465
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  26633521 caaaagcgtattttacttgtgtgcctcaaccttatgaaatgtgtcaacaacaatttt 26633465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 29709259 - 29709323
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| ||||||||||| |||||||||||| |||||| | | |||||||||    
T  29709259 tgagatgaataatggatgaaagagcttctgctagatttatagcaaaagatctttgacagttaact 29709323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 51269063 - 51269003
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagtt 76  Q
    |||||||||||||| |||||||||||||||| | |||| ||||||||||||||||| ||||    
T  51269063 tgagatgaataatgaatgagagagcttctgctaaatttgtagcagaagatcctcggtagtt 51269003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 25040134 - 25040205
Alignment:
Q  67 ctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    |||| |||||||||||||| |||||||||  ||||||||| |||||||||| || |||||||||||||||||    
T  25040134 ctcgacagttaactgccgaagggacaaaattgtattttacttgtgtgcctcggctttatgaaatgtgtcaac 25040205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 29435097 - 29435027
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||| || |||||| |||||||||| ||||||    
T  29435097 tgagatgaataatggatgagagaacttctgccaaatttgtagca-aaaatcctctgcagttaactaccgagg 29435027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 14172130 - 14172048
Alignment:
Q  66 cctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| || ||| |||||||||  ||||| |||||||||| ||||||| ||||||||||| ||||||||||||||| |||||    
T  14172130 cctcggtagctaagtgccgagggggcaaaagcgtattttacttgtgtgcttcagccttatggaatgtgtcaacaacaattttc 14172048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 49924870 - 49924796
Alignment:
Q  68 tcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||| |||||| ||| ||||||||||  ||||  |||||||||||||||||| |||||||||||||||    
T  49924870 tcggcagttaattgccgaaggggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaacaaca 49924796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 18975176 - 18975253
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| |||||||| ||||||||  |||||||||||||||| ||||| ||||||| ||||  |||||||||||||||    
T  18975176 tcctcgacagttaaccgccgagggggcaaaaacgtattttacttgtgtacctcagctttatacaatgtgtcaacaaca 18975253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 19499174 - 19499250
Alignment:
Q  71 gcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||| |||||  ||||||| ||||||    
T  19499174 gcagttaactgtcgaggg-caaaaacgtattttacttgtgtgtctcagtcttatgatatgtgcgaacaacaattttct 19499250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4208502 - 4208454
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcct 68  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  4208502 atgaataatggatgagagagcttctggtagatttgtagcagaagatcct 4208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 29261424 - 29261349
Alignment:
Q  72 cagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||||| | |||||||||||||||| | ||||| || ||||||||||| |||||||||||| |||||    
T  29261424 cagttaactgccgaggaggcaaaaacgtattttacttctgtgcatc-gccttatgaaacgtgtcaacaacaattttc 29261349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 36911749 - 36911801
Alignment:
Q  89 acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||| | |  ||||||||||||||||||||||||||||||    
T  36911749 acaaaaacgtattttacttatccgcctcagccttatgaaatgtgtcaacaaca 36911801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 1654815 - 1654748
Alignment:
Q  70 ggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||||||||||| ||| ||||  |||||| || | ||||||||||||||||||||||||||||    
T  1654815 ggcagttaactgccgagaggataaaattgtatttcacttttgtgcctcagccttatgaaatgtgtcaa 1654748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 19159750 - 19159677
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  19159750 agatgaataatggatgagaggagattctgccagattttgtagcgcagaagatcctcggcagttaactaccgagg 19159677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 36076641 - 36076696
Alignment:
Q  92 aaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||| || |||||    
T  36076641 aaaacgtattttacttgtgtttctcagccttatgaaatgtgtcaacagcaattttc 36076696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 146
Target Start/End: Complemental strand, 42570132 - 42570077
Alignment:
Q  91 aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||||    
T  42570132 aaaatcgtgttttacttgtgtgcctcagccttatgaaacgtgtcaacaacaatttt 42570077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 4516021 - 4515971
Alignment:
Q  86 gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||||||| |||||||||| ||||||||||| ||| ||||||||||||||    
T  4516021 gggacaaaatcgtattttacttgtgtgcctcaccctaatgaaatgtgtcaa 4515971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 146
Target Start/End: Complemental strand, 7966034 - 7965976
Alignment:
Q  88 gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    |||||||| ||||||||| | ||||||||| ||||||||||| ||||||||||| ||||    
T  7966034 gacaaaaatgtattttacttttgtgcctcaaccttatgaaatatgtcaacaacaatttt 7965976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 7981219 - 7981269
Alignment:
Q  97 gtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||| |||||    
T  7981219 gtattttacttgtgttcctcaaccttatgaaatgtgtcaacaacaattttc 7981269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 36072362 - 36072304
Alignment:
Q  89 acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| |||||||||  ||||||||| | ||||||||||||||||||||||| |||||    
T  36072362 acaaaatcgtattttatttgtgtgccttaaccttatgaaatgtgtcaacaacaattttc 36072304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 36908699 - 36908640
Alignment:
Q  16 tgagatgaataatggatga----gagagcttctgccagatttatagcagaagatcctcgg 71  Q
    |||||||||||||||||||    ||||||||||||||||||| ||||||||| |||||||    
T  36908699 tgagatgaataatggatgaatgagagagcttctgccagatttgtagcagaagctcctcgg 36908640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 11183203 - 11183126
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||| ||||||||||| | ||||| ||||||||||||||||  || |  ||||||||||| ||||||||||||||||    
T  11183203 tcctcagcagttaactgtcaagggagcaaaaacgtattttactcgtatttctcagccttatcaaatgtgtcaacaaca 11183126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 23276164 - 23276241
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||| ||||||||||||||||||  ||||||||||||||||  ||||  ||||||||||| ||||| || |||||||    
T  23276164 tcctcagcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatgcgtgaacaaca 23276241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 35258928 - 35258997
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgt 133  Q
    |||||||||||||||||||||  || ||   ||||||||||| |||||| ||||||||||||||||||||    
T  35258928 tcctcggcagttaactgccgaatgagcatttacgtattttacttgtgtgtctcagccttatgaaatgtgt 35258997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 41779804 - 41779767
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagattt 53  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  41779804 tgagatgaataatggatgagagagcttctgctagattt 41779767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 1656159 - 1656223
Alignment:
Q  83 cgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| ||||||| ||||||||  ||||  |||| ||||||||||||||||||||||| |||||    
T  1656159 cgaggggcaaaaacatattttactcgtgtttctcaaccttatgaaatgtgtcaacaacaattttc 1656223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 1872104 - 1872048
Alignment:
Q  85 agggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||| ||||| | ||||||||  |||||||||||||||||| |||||||||||||||    
T  1872104 aggggcaaaagcatattttactcgtgtgcctcagccttatgcaatgtgtcaacaaca 1872048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 24364680 - 24364744
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||| ||||||||||||||||||| |||||  ||  | |||||||||||||| |||||    
T  24364680 aataatggatgtgagagcttctgccagatttgtagcaagagcgcatcggcagttaactgtcgagg 24364744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 27485076 - 27485008
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    |||| |||||||||||||||||||  ||||||||||||||||  ||||  ||||||||||| |||||||    
T  27485076 tcctaggcagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccttatcaaatgtg 27485008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Original strand, 8460152 - 8460226
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||  ||||||| ||||||| |||||||||||| ||||   ||||||||||||||||  ||||||||||||    
T  8460152 tcctcggttgttaactaccgaggggacaaaaacgtatattactcatgtgcctcagccttatagaatgtgtcaaca 8460226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 94423 - 94350
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||| || |||||||||  |||||   |||| | ||||||||| |||||||| |||||||    
T  94423 tcggcagttaactgccgaagggcaaaaacgtcatttactcatgtggcacagccttatcaaatgtgtaaacaaca 94350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 9711707 - 9711784
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||| || ||| ||||| ||||||||||  ||||||| || |||||| |||||||  |||||||    
T  9711707 tcctcggcagttaactgctgatggggcaaaatcgtattttactagtgtgccacaaccttatcaaatgtgggaacaaca 9711784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 21944458 - 21944519
Alignment:
Q  86 gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||| ||||||||||||||  | |||| | ||||||||||| |||||||||||||| |||||    
T  21944458 gggataaaaacgtattttatttatgtgtcccagccttatgatatgtgtcaacaacaattttc 21944519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 51268980 - 51268907
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| |||||| |||||||||||||||||  ||||| |||||| | ||  |||||| |||||| ||||||||    
T  51268980 tcggcaattaactaccgagggacaaaaacgtcatttacatgtgtgacacattcttatgcaatgtgccaacaaca 51268907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 51666696 - 51666777
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||| ||||||||||||||  ||||| ||||||||||  ||||| | |||| ||||| |||||||||||| || |||||    
T  51666696 ctcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagctttatgcaatgtgtcaacatcaattttc 51666777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 35526983 - 35527053
Alignment:
Q  16 tgagatgaataatggatgag--agagcttctgccaga--tttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||  |||| |||||||| |  ||| |||||||||||||||  |||||||||||    
T  35526983 tgagatgaataatggatgagatagaggttctgccatatttttgtagcagaagatcctctacagttaactgc 35527053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 49857908 - 49857985
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    |||||||||||||||||||||  ||   ||||||||||| |||||  |||| |||||| |||||||||||||||| ||||    
T  49857908 tcggcagttaactgccgagggggcatttacgtattttacttgtgt--ctcaaccttataaaatgtgtcaacaacaatttt 49857985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 21188374 - 21188440
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21188374 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactgc 21188440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 30355189 - 30355258
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  30355189 agatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaactaccgagg 30355258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 9494862 - 9494947
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    ||||||||||||||||||||||||  || | || |||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  9494862 tcctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttctt 9494947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 41047902 - 41047833
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||    
T  41047902 tgagatgaataatggatgagagagcttcctccagatttgtagcagaagatcctcggcagttaactaccga 41047833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 28980123 - 28980191
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  28980123 gatgaataatggatgagagagcttctgtcagatttgtagcagaaaatcctcggcagttaactaccgagg 28980191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 40587786 - 40587722
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  40587786 tgagatgaataatggatgagagagcttctttcagatttatagcataagatcctcggcagttaact 40587722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 46863292 - 46863356
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||    
T  46863292 tgagatgaataatggatgaaagagcttctgccagatttgtagcagaagatcttcggcagttaact 46863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 48314690 - 48314614
Alignment:
Q  65 tcctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| ||||||| |||||||||||||||    
T  48314690 tcctcggcagttaactgccgaggggcaaaaatgtattttacttgtgtacctcaaccttatgcaatgtgtcaacaaca 48314614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 36394886 - 36394957
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||    
T  36394886 tgagattaataacggatgagagagcttctgccagatttgtagcagaagatcctcggtagttaactaccgagg 36394957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 34139996 - 34139930
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||    
T  34139996 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgc 34139930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 48269694 - 48269621
Alignment:
Q  68 tcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||| |  |||||| |||||||| |||||||||||||||||| ||||||||||||||||    
T  48269694 tcggcagttaactgccgagagggaaaaacatattttacttgtgtgcctcagccttataaaatgtgtcaacaaca 48269621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 42682119 - 42682048
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| | ||||||    
T  42682119 tgagatgaataatggatgagagaacttatgctagatttgtagcagaagatcctcggcagttaattaccgagg 42682048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 46863402 - 46863477
Alignment:
Q  67 ctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||||||| |||| ||||||||||    
T  46863402 ctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaacaaca 46863477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 47060944 - 47060869
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    |||||| |||||||||||||||||  |||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  47060944 tcctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctcagccttatgaaatatgtcaacaa 47060869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17838776 - 17838711
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||    
T  17838776 tgagatgaataatggatgagaggagattctgccagatttgtagcagaagatcgtcggcagttaact 17838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 28112852 - 28112775
Alignment:
Q  72 cagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||||||||| || ||||| |||||||||| |||||| |||| ||||||||||||||||||||||| ||||||    
T  28112852 cagttaactgccgagagggcaaaagcgtattttacttgtgtgtctcaaccttatgaaatgtgtcaacaacaattttct 28112775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 43686859 - 43686972
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcag 118  Q
    ||||||||||||||||||||||| || ||||||| |||||||| || |||||||||||||| | ||| || ||||| ||||||||||  ||||| | ||     
T  43686859 atgaataatggatgagagagcttatgtcagatttgtagcagaaaattctcggcagttaactactgagagggcaaaatcgtattttactagtgtggcacaa 43686958  T
Q  119 ccttatgaaatgtg 132  Q
    |||||| |||||||    
T  43686959 ccttatcaaatgtg 43686972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 19044311 - 19044236
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    ||||||||| |||||||||||| || ||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  19044311 tcctcggcaattaactgccgagtgaacaaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaa 19044236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 139
Target Start/End: Original strand, 20710325 - 20710400
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    ||||||||| |||||||||||| || ||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  20710325 tcctcggcaattaactgccgagtgaacaaaaacgtattttactcatgtgcctcagccttatgcaatgtgtcaacaa 20710400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 46860528 - 46860457
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtca 135  Q
    |||||| |||||||||||||||||  ||||| |||||||||| ||||||||||||||||||| |||||||||    
T  46860528 tcctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgtaatgtgtca 46860457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 36392135 - 36392065
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||| ||||||  |||||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  36392135 cagttaactgtcgagggggcaaaaacgtattttacttgtgtgcctaagccttatgtaatgtgtcaacaaca 36392065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 28115480 - 28115549
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||  ||||||||| ||||    
T  28115480 tgagatgaataatggatgagagagcttatgctagatttgtagcagaagaccctcaacagttaactaccga 28115549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 48269766 - 48269710
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggc 72  Q
    ||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  48269766 tgagatgaataatggatgagagaacttttgtcagatttgtagcagaagatcctcggc 48269710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 36186528 - 36186611
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| ||||||||||||||  ||||| ||||||||||  ||||| | |||||||||| ||||||||||||||| |||||    
T  36186528 tcctcggcatttaactgccgagggggcaaaagcgtattttactcgtgtgacacagccttatgcaatgtgtcaacaacaattttc 36186611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 42684221 - 42684292
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaac 137  Q
    |||| |||||||||||||| ||| |||||||||||||||| |||||| |||||||||||| ||| |||||||    
T  42684221 ctcgacagttaactgccgatggaacaaaaacgtattttacttgtgtgtctcagccttatgcaatatgtcaac 42684292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 45364168 - 45364227
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagt 75  Q
    ||||||||||||| ||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  45364168 tgagatgaataatagataagagagcttctaccagatttgtagccgaagatcctcggcagt 45364227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 28980232 - 28980306
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||| ||||||| |||||  ||||||||||||||||  ||||| |||||||||||| |||||||||||||||    
T  28980232 tcggcagctaactgctgagggggcaaaaacgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaaca 28980306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 48316319 - 48316393
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||| | ||||  ||||||| |||||||| |||||| ||||||||||||||||||| ||||||||    
T  48316319 tcggcagttaactgtcaagggggcaaaaacttattttacttgtgtgtctcagccttatgaaatgtgccaacaaca 48316393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 10705263 - 10705182
Alignment:
Q  67 ctcggcagttaactgccgagggac-aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||| ||||   ||||| ||||||||| ||||||||| ||||||||||||| |||||| |||| |||||    
T  10705263 ctcggcagttaactgccaaggggggaaaaatgtattttacttgtgtgccttagccttatgaaatatgtcaataacaattttc 10705182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 34622516 - 34622439
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||| ||||||||||| | ||||  ||||||||||  |||| ||||||||||||||||||| |||||||||||||||    
T  34622516 tcctctgcagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaacaaca 34622439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 41049252 - 41049321
Alignment:
Q  72 cagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||| |||| | |||||| |||||||||| | ||||| ||||||||||| |||||||||||||||    
T  41049252 cagttaactaccgaagaacaaaagcgtattttacttatgtgcatcagccttatgcaatgtgtcaacaaca 41049321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 41623897 - 41623945
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||||||||    
T  41623897 caaaaacgtattttacttgtgtgcctcaaccttatgtaatgtgtcaaca 41623945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 11100503 - 11100586
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||| ||||  ||   ||||||||||| ||||||||||  |||||| |||||||||||||||| |||||    
T  11100503 tcctcggcagttaactgccaagggggcatttacgtattttacatgtgtgcctcgaccttataaaatgtgtcaacaacaattttc 11100586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 21185633 - 21185559
Alignment:
Q  68 tcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||||| | ||||| |||||||||| | |||| |||| | ||||| |||||||||||||||    
T  21185633 tcggcagttaactgccgaggaggcaaaatcgtattttacttatgtgtctcatcattatgcaatgtgtcaacaaca 21185559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 10225906 - 10225983
Alignment:
Q  72 cagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatg-aaatgtgtcaacaacatttttc 147  Q
    |||||||||| ||||| | ||||||| |||||||| | ||||| ||||||||||| |||||||||||||||| |||||    
T  10225906 cagttaactgtcgaggaggcaaaaacatattttacttatgtgcttcagccttatgaaaatgtgtcaacaacaattttc 10225983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 40590549 - 40590637
Alignment:
Q  67 ctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttatatt 154  Q
    ||||||||||||||||||| ||| |||||||||||||||   ||||  ||||||||||| |||||||  ||||||| || |||| ||||    
T  40590549 ctcggcagttaactgccgagggggcaaaaacgtattttattcgtgtttctcagccttatcaaatgtgggaacaacaattctcttttatt 40590637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 48316259 - 48316294
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagattt 53  Q
    |||| |||||||||||||||||||||||||||||||    
T  48316259 agattaataatggatgagagagcttctgccagattt 48316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 37340319 - 37340245
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||| |||||||||| ||| | |||||||||||||||||  | ||||||| || |||||| ||||||||||||    
T  37340319 tcctcgacagttaactgtcgaagagacaaaaacgtattttatttatgtgccttagtcttatgtaatgtgtcaaca 37340245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 10708332 - 10708401
Alignment:
Q  71 gcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    ||||||||||||||| ||| ||||||  ||||||||  ||||  ||||| ||||||||||||||||||||    
T  10708332 gcagttaactgccgaaggggcaaaaatatattttactcgtgtttctcagtcttatgaaatgtgtcaacaa 10708401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 27453650 - 27453727
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| ||| ||||  |||||||||| | |||  || |||||||| |||||||| |||||||    
T  27453650 tcctcggcagttaactgccgagggggcaaagtcgtattttacttatgtttctaagccttatcaaatgtgtgaacaaca 27453727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 42682002 - 42681934
Alignment:
Q  74 gttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||| |||||| |||||||| | ||||||| | |||||||||||||||| |||| |||||| ||||    
T  42682002 gttaactaccgaggagacaaaaatgcattttacttatgtgcctcagccttataaaatatgtcaagaaca 42681934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 46596887 - 46596843
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtc 134  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||||    
T  46596887 caaaaacgtattttactcgtgtgcgtcagccttatgcaatgtgtc 46596843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 56138377 - 56138313
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  56138377 tgagatgaataatggatgagagagcttctgccagatttgtagcagaagatcctcggcagttaact 56138313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 34530743 - 34530809
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  34530743 tgagatgaataatggatgagagagcttctgccaaatttgtagcagaagatcctcggcagttaactgc 34530809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 39588191 - 39588125
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  39588191 tgagatgaataatggatgagagagcttctgccatatttgtagcagaagatcctcggcagttaactgc 39588125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 44561278 - 44561348
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  44561278 tgagatgaataatggatgagagagcttctgccagatttgtagcagacgatcctcggcagttaactaccgag 44561348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 29700358 - 29700442
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||| ||||||||||| ||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  29700358 tcctcagcagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttct 29700442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 958542 - 958613
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  958542 tgagaagaataatggatgagagagcttctgccggatttgtagcagaagatcctcggcagttaactaccgagg 958613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 34154458 - 34154541
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||||| |||||||||| |||||||||| ||||  |||||||||||||||||||||||||||| |||||    
T  34154458 tcctcggcagttaactgccgatgggacaaaaatgtattttacccgtgtttctcagccttatgaaatgtgtcaacaacaattttc 34154541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 34154376 - 34154442
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  34154376 tgagatgaataatagatgagagagcttctgccagatttgtagcagaagatcctctgcagttaactgc 34154442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 42885576 - 42885503
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccaga--tttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  42885576 tgagatgaataatggatgagagagcttctgccagatttttgtagcagaagatcatcggcagttaactgccgagg 42885503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 51429277 - 51429343
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  51429277 tgagatgaataatggatgagagagcttcttccagatttgtagcagaagatcctcgacagttaactgc 51429343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 56304975 - 56304909
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  56304975 tgagatgaataatggatgagagagcttctgccagatttgtagcagaaaatcctcggcaattaactgc 56304909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6283417 - 6283481
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||    
T  6283417 agatgaataatggatgagagagcttcggccagatttgaagcagaagatcctcggcagttaactgc 6283481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 151
Target Start/End: Complemental strand, 4768695 - 4768608
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttat 151  Q
    ||||||||||||||||||||||||  |||||   |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||    
T  4768695 tcctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaacaacaattttcttat 4768608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 21472540 - 21472623
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||||||| | ||||||||||||||||  ||||  |||||||||||||||||||||||||||| |||||    
T  21472540 tcctcggcagttaactgccgaggcggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaattttc 21472623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 49572956 - 49573032
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaac 140  Q
    |||||| |||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  49572956 tcctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaac 49573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 51426554 - 51426471
Alignment:
Q  65 tcctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||| |||||||||| |||  ||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||    
T  51426554 tcctcgacagttaactgtcgaaaggacaaaaacgtattttacttgtgtgcctaagccttatgaaacgtgtcaacaacaattttc 51426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 147
Target Start/End: Original strand, 958655 - 958732
Alignment:
Q  71 gcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||| || |||||    
T  958655 gcagttaactgtcgagaggacaaaaacgtattttacttatgtgcctcagccttataaaatgtgtcaacatcaattttc 958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 243296 - 243359
Alignment:
Q  19 gatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    |||||||||||  |||||||||||||||||||||| || ||||||||||||| |||||||||||    
T  243296 gatgaataatgagtgagagagcttctgccagatttgtaacagaagatcctcgacagttaactgc 243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 37959783 - 37959858
Alignment:
Q  72 cagttaactgccgagggac-aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    |||||||||||||||||   |||||||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  37959783 cagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatgtgtcaacaacaatttt 37959858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 1042056 - 1041990
Alignment:
Q  20 atgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgag 86  Q
    ||||| |||| |||||||||||| |||||||||| ||| |||||||||||||||||||||| |||||    
T  1042056 atgaacaatgaatgagagagcttatgccagatttgtagtagaagatcctcggcagttaactaccgag 1041990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 44051148 - 44051225
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||| ||||| ||| ||||||||||  ||||  |||||||||||||||||| |||||||||||||||    
T  44051148 tcctcggcagttaaccgccgatggggcaaaaacgtaaattactggtgtgcctcagccttatgcaatgtgtcaacaaca 44051225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 44561388 - 44561473
Alignment:
Q  67 ctcggcagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttat 151  Q
    |||||||||||||  ||||| || ||||| ||||||||||  ||||  |||||||||||||||||||||||||||| |||||||||    
T  44561388 ctcggcagttaacaaccgagagggcaaaatcgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaattttcttat 44561473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 955809 - 955726
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||| ||||||||||||| | | | |||||||||||||||| ||||||||||| | |||||||||||||||||| || |||||    
T  955809 tcctcagcagttaactgccaaagaggcaaaaacgtattttacttgtgtgcctcaactttatgaaatgtgtcaacatcaattttc 955726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 28081582 - 28081519
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||||| || ||||||    
T  28081582 agatgaataatggatgagaggagattctgccagatttgtagcagaagatcctcgacacttaact 28081519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 44558684 - 44558633
Alignment:
Q  97 gtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  44558684 gtattttacttgtgtgcctcagccttatgtaatgtgtcaacaacaattttct 44558633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 48256650 - 48256701
Alignment:
Q  95 acgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  48256650 acgtattttacttgtgtgcctcagccttatgaaatgtgtgaacaacaatttt 48256701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 49422139 - 49422077
Alignment:
Q  85 agggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||| |||||||||||||||  |||||| |||||||||||||||||||| ||||||| |||||    
T  49422139 aggggcaaaaacgtattttatttgtgtgactcagccttatgaaatgtgtaaacaacaattttc 49422077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 4786296 - 4786345
Alignment:
Q  30 gatgagagagcttctgccagatttatagcagaagatcctcggcagttaac 79  Q
    ||||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  4786296 gatgagagagcttctaccagatttgtagcagaagatcatcggcagttaac 4786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 17139640 - 17139559
Alignment:
Q  67 ctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    |||| |||||||||||||||||||||   |||||||||| |||||  |||| |||||||| |||||| ||||||| ||||||    
T  17139640 ctcgacagttaactgccgagggacaatttcgtattttacatgtgtttctcaaccttatgatatgtgtgaacaacaattttct 17139559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 21017951 - 21018023
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagatttatagc--agaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||| |||||||| || ||||||||||||| ||||  |||||||| ||||||||||||||||||||    
T  21017951 agatgaataatagatgagaggagattctgccagatttgtagctcagaagatcatcggcagttaactgccgagg 21018023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 21470919 - 21470838
Alignment:
Q  66 cctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacattttt 146  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||||||||| ||||||  ||||||| || |||| ||||    
T  21470919 cctcgacagttaactgccgagaagacaaaaacgtattttacttgtgtgcctcaaccttatccaatgtgtaaagaacaatttt 21470838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 29700268 - 29700321
Alignment:
Q  34 agagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||| ||||||    
T  29700268 agagagcttctgccagatttgtagcagaagatcatcggcaattaactaccgagg 29700321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 18581385 - 18581436
Alignment:
Q  98 tattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    ||||| || ||||||||||| ||||||||||||||||||||||| |||||||    
T  18581385 tatttaacttgtgtgcctcaaccttatgaaatgtgtcaacaacaattttctt 18581436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 55794047 - 55793974
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  55794047 agatgaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactcccgagg 55793974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 4979980 - 4980050
Alignment:
Q  72 cagttaactgccgagggac-aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||  |||||||||  ||||  |||||||||| ||||||| |||||||||||||||    
T  4979980 cagttaactgccgagggaggaaaaacgtaaattactcgtgtgcctcaaccttatgcaatgtgtcaacaaca 4980050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 3450104 - 3450153
Alignment:
Q  98 tattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||| ||||||||||||||||||||||| |||||||| || |||||    
T  3450104 tattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattttc 3450153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 6178056 - 6178129
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| ||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  6178056 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactaccgagg 6178129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 49094211 - 49094138
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| ||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  49094211 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactaccgagg 49094138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 6280867 - 6280797
Alignment:
Q  72 cagttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||| || ||||||||||  ||||  ||||||| || ||||||| |||||||||||||||    
T  6280867 cagttaactgccgagagggcaaaaacgtaaattactcgtgtgccccaaccttatgcaatgtgtcaacaaca 6280797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 11287593 - 11287531
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccga 85  Q
    |||||||||||||||||||||||||| |||| |||||  ||  | || |||||||||||||||    
T  11287593 aataatggatgagagagcttctgccacatttgtagcatgagcgcatctgcagttaactgccga 11287531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 11494561 - 11494475
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctta 150  Q
    |||||| ||||||| ||||||||| |||||||||||||||||  ||||  |||| |||| | ||||||||| |||||| || |||||    
T  11494561 tcctcgacagttaattgccgaggggacaaaaacgtattttactcgtgtttctcacccttttcaaatgtgtcgacaacaattctctta 11494475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 33383796 - 33383750
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||| ||||||||| ||||||||| | ||||||||||||||||||    
T  33383796 caaaaatgtattttacttgtgtgcctaaaccttatgaaatgtgtcaa 33383750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40354548 - 40354616
Alignment:
Q  18 agatgaataatggatgaga-gagcttctgccagatt---tatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||| ||| ||||||||||||   || |||| ||||||||||||| ||||||||    
T  40354548 agatgaataatggatgagaggagattctgccagattttgtagagcataagatcctcggcaattaactgc 40354616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 51644563 - 51644613
Alignment:
Q  97 gtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| | ||||||||||||| || |||||||||||||||| |||||    
T  51644563 gtattttacttatgtgcctcagcctaataaaatgtgtcaacaacaattttc 51644613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 4774645 - 4774717
Alignment:
Q  76 taactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||| |||| ||||||||||||||||   |||  |||||| ||||||||||||||||||||| ||||||    
T  4774645 taactgccgtgggaacaaaaacgtattttactcatgtttctcagc-ttatgaaatgtgtcaacaacaattttct 4774717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 50274777 - 50274700
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||||||| ||| ||||||||||  ||||  ||||||| ||||| ||| |||||||  |||||||    
T  50274777 tcctcggcagttaactgccgagggggcaaaaacgtaaattactcgtgtgccacagccctatcaaatgtgggaacaaca 50274700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 51683276 - 51683200
Alignment:
Q  66 cctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    ||||||||||||||||| |||||  ||||||||||||||||  ||||  |||||||||||  ||||| | |||||||    
T  51683276 cctcggcagttaactgctgagggggcaaaaacgtattttactcgtgtttctcagccttatcgaatgtatgaacaaca 51683200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 56304893 - 56304817
Alignment:
Q  65 tcctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| |||||||||||||| || |||||| |||||||||  ||||  |||| |||||| |||||||  |||||||    
T  56304893 tcctcgacagttaactgccgatgggcaaaaatgtattttactcgtgtttctcaaccttatcaaatgtgggaacaaca 56304817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 18847 - 18918
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  18847 tgagatgaataatggatgagaaagcttctgccagatttgtagcagaagatcctcgacagttaactaccgagg 18918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 16426 - 16354
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaa 139  Q
    |||| ||||||||| |||||||  ||||||| |||||| | |||||||||||| ||||||||||||||||||||    
T  16426 ctcgacagttaactaccgagggggcaaaaacatatttt-catgtgtgcctcagtcttatgaaatgtgtcaacaa 16354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 25969 - 25892
Alignment:
Q  65 tcctcggcagttaactgccgagggac-aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||| ||||||||||| ||||||| | |||||| ||  ||||  || ||||||||||||||| |||||||||||||||    
T  25969 tcctaggcagttaactaccgagggcccaaaaacataaattactcgtatgcctcagccttatgcaatgtgtcaacaaca 25892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 29061395 - 29061329
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  29061395 tgagatgaataatggatgagagagcttctaccagatttgtagcagaagatcctcggaagttaactgc 29061329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 12783905 - 12783969
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  12783905 tgagatgaataatggatgagagagctttttccagatttgtagcagaagatcctcggcagttaact 12783969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29065853 - 29065791
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29065853 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29065791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29074866 - 29074804
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29074866 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29074804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29079630 - 29079568
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29079630 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 29107439 - 29107377
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaa 78  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  29107439 tgagatgaataatggatgagagagcttccgccagatttgtagcagaagatcctcgacagttaa 29107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 13479736 - 13479659
Alignment:
Q  72 cagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    ||||||||| |||||||  ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  13479736 cagttaactaccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttct 13479659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 32026096 - 32026039
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  32026096 caaaaacgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 32026039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 13401611 - 13401547
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaact 80  Q
    |||||||||||||||||||||||||||||| || |||| ||||||||||||||||| ||||||||    
T  13401611 tgagatgaataatggatgagagagcttctgtcatatttgtagcagaagatcctcggtagttaact 13401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 23958905 - 23958817
Alignment:
Q  67 ctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttatatt 154  Q
    |||||||||||||||||||||| ||||||||||||||||  || ||| ||||||||||| | |||||||||||||| |||||| |||||    
T  23958905 ctcggcagttaactgccgaggggacaaaaacgtattttagttgggtgtctcagccttatcatatgtgtcaacaacaattttctaatatt 23958817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32034340 - 32034406
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  32034340 tgagacgaataatggataagagatcttctgccagatttgtagcagaagatcatcggcagttaactgc 32034406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 34801554 - 34801482
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||||| ||||||||||    
T  34801554 tcctcagcagttaactgccgaggagacaaaaacgtattttacttgtgttcctcagcattatgtaatgtgtcaa 34801482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 2051043 - 2050974
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaa 136  Q
    |||||||||||||||||| ||| ||||||||||||||||  |||||| ||||||||||| ||||||||||    
T  2051043 tcggcagttaactgccgaaggagcaaaaacgtattttactcgtgtgcatcagccttatgcaatgtgtcaa 2050974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 17596764 - 17596831
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttat---agcagaagatcctcggcagttaact 80  Q
    ||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||| || ||||||    
T  17596764 tgagatgaataatggatgagatagcttctgccagatttatagcagcagaagatcctcgacaattaact 17596831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 29286246 - 29286169
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||| |||||||  ||||||||||  |||| ||||||||||| ||||||| |||||||||||||||    
T  29286246 tcctcggcagttaactaccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacaaca 29286169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 12784016 - 12784074
Alignment:
Q  68 tcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatg 125  Q
    |||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||    
T  12784016 tcggcagttaactgccgatggggcaaaagcgtattttacttgtgtgcctcagccttatg 12784074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 18606062 - 18605985
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||| ||||||||||| |||||||  ||||||||||||||||  |||||||||||||| ||  |||||||||||||||    
T  18606062 tcctaggcagttaactaccgagggggcaaaaacgtattttactcgtgtgcctcagcctcatacaatgtgtcaacaaca 18605985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 23986039 - 23986099
Alignment:
Q  67 ctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatga 126  Q
    ||||||||||||||||| ||||  |||||||||||||||| |||||| |||||||||||||    
T  23986039 ctcggcagttaactgccaagggggcaaaaacgtattttacttgtgtgtctcagccttatga 23986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 7361209 - 7361134
Alignment:
Q  64 atcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||| |||||||| |||||| ||||||||||||||  ||||  ||||||| |||||||||| ||||||||||||    
T  7361209 atcctcagcagttaattgccgacgggacaaaaacgtaaattactcgtgtgccacagccttatgcaatgtgtcaaca 7361134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 17996622 - 17996539
Alignment:
Q  65 tcctcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||||||| ||||  ||   ||||||||||| ||||||||||  |||||| |||||||||||||||| |||||    
T  17996622 tcctcggcagttaactgccaagggggcatttacgtattttacatgtgtgcctcgaccttataaaatgtgtcaacaacaattttc 17996539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 30258263 - 30258333
Alignment:
Q  18 agatgaataatggatgagagagcttctgccagattt--atagcagaagatcctcggcagttaactgccgag 86  Q
    |||||||||||||||||||||||||||  |||||||   |||| ||||||  |||||||||||||||||||    
T  30258263 agatgaataatggatgagagagcttctctcagattttcgtagctgaagattatcggcagttaactgccgag 30258333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 18001197 - 18001148
Alignment:
Q  98 tattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||| |||||    
T  18001197 tattttacttgtgtacctcaaccttatgaaatgtgtcaacaacaattttc 18001148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 26856013 - 26855976
Alignment:
Q  23 aataatggatgagagagcttctgccagatttatagcag 60  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  26856013 aataatggatgagagagcttctgccagatttgtagcag 26855976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 32643577 - 32643661
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttct 148  Q
    |||| |||||||||||||||||| | ||   ||||||||||| |||| || ||| ||||||||||||||| ||||||| ||||||    
T  32643577 tccttggcagttaactgccgaggaggcatttacgtattttacttgtgggcttcaaccttatgaaatgtgtgaacaacaattttct 32643661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 6204954 - 6204881
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| ||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  6204954 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactaccgagg 6204881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 11691921 - 11691848
Alignment:
Q  18 agatgaataatggatgagag-agcttctgccagattt---atagcagaagatcctcggcagttaactgccgagg 87  Q
    |||| ||||||||||||||| || |||||||||||||   |  |||||||||||||||||||||||| ||||||    
T  11691921 agatcaataatggatgagaggagattctgccagattttgtagtgcagaagatcctcggcagttaactaccgagg 11691848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 26702737 - 26702800
Alignment:
Q  86 gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttctt 149  Q
    |||| |||| ||||||||||  ||||| | |||||||||| ||||||||||||||| |||||||    
T  26702737 gggataaaagcgtattttactcgtgtgacacagccttatgcaatgtgtcaacaacaattttctt 26702800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 26701861 - 26701795
Alignment:
Q  73 agttaactgccgag-ggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||| |||| || ||||| | |||||||  ||||||||||||||| ||||||||||||||||    
T  26701861 agttaactgtcgagtgggcaaaatcatattttatttgtgtgcctcagcctaatgaaatgtgtcaaca 26701795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 2052639 - 2052715
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| |||||||||||||| ||||||||||||||  ||||  ||||||||||| |||||  |||||| ||||||||    
T  2052639 tcctcgacagttaactgccgaggggacaaaaacgtaaattactcgtgtgcctcag-cttatacaatgtgccaacaaca 2052715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 6320545 - 6320622
Alignment:
Q  65 tcctcggcagttaactgccgagg-gacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||| |||||||||||||||| ||||||||| |||||||   ||||  |||| |||||| |||| |||||||||||    
T  6320545 tcctcgacagttaactgccgaggagacaaaaacatattttattcgtgtttctcaaccttatcaaatatgtcaacaaca 6320622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 24218034 - 24217945
Alignment:
Q  67 ctcggcagttaactgccgagggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttcttatatttt 156  Q
    ||||||||||||||||| ||| ||||   ||||||||||  ||||| ||||||||||||| |||| | | || || |||||||| |||||    
T  24218034 ctcggcagttaactgcctaggaacaatttcgtattttactcgtgtgtctcagccttatgatatgtatgaccatcaattttcttaaatttt 24217945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 25141179 - 25141212
Alignment:
Q  108 gtgtgcctcagccttatgaaatgtgtcaacaaca 141  Q
    |||||||||||||||||| |||||||||||||||    
T  25141179 gtgtgcctcagccttatgcaatgtgtcaacaaca 25141212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 29061313 - 29061245
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    ||||||||||||||||||||| ||| |||||| |||  ||||  ||||||| |||||||||| ||||||    
T  29061313 tcctcggcagttaactgccgagggggcaaaaaagtaaattactcgtgtgccacagccttatgtaatgtg 29061245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 34634317 - 34634281
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatt 52  Q
    |||||| |||||||||||||||||||||||| |||||    
T  34634317 tgagataaataatggatgagagagcttctgctagatt 34634281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 12335 - 12407
Alignment:
Q  16 tgagatgaataatggatgagag-agcttctgccagatttatagcagaagatcctcggcagttaactgccgagg 87  Q
    |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||    
T  12335 tgagatgaataatggatgagagtagattctgccagatttgtagcagaagatcctcggcagttaactaccgagg 12407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 921 - 855
Alignment:
Q  16 tgagatgaataatggatgagagagcttctgccagatttatagcagaagatcctcggcagttaactgc 82  Q
    ||||||||||||||||| |||||||||||||||||||| |||  |||||||||||||||||||||||    
T  921 tgagatgaataatggataagagagcttctgccagatttgtagaggaagatcctcggcagttaactgc 855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 1236 - 1307
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtca 135  Q
    |||||||||||||||||||||||| |||||||||||  ||||  |||||||||||||||||| |||||||||    
T  1236 tcctcggcagttaactgccgaggggacaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtca 1307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 27433 - 27377
Alignment:
Q  91 aaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||||||||| ||||||||| | | ||||||||||||||||||||| |||||    
T  27433 aaaaacgtattttacttgtgtgccttaactttatgaaatgtgtcaacaacaattttc 27377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 15926 - 15976
Alignment:
Q  97 gtattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  15926 gtattttacttgtatgcctcagcctaatgaaatgtgtcaacaacaattttc 15976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 885 - 934
Alignment:
Q  98 tattttacctgtgtgcctcagccttatgaaatgtgtcaacaacatttttc 147  Q
    |||||||| ||||||||||||||||||||||| |||||||| || |||||    
T  885 tattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattttc 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 493 - 564
Alignment:
Q  68 tcggcagttaactgccgaggga-caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||||||||||||||||||| ||||| ||||||||||  ||||  ||||| ||||| |||||||| ||||    
T  493 tcggcagttaactgccgagggagcaaaatcgtattttactcgtgtttctcagtcttatcaaatgtgtaaaca 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 3902 - 3829
Alignment:
Q  65 tcctcggcagttaactgccgaggg-acaaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    |||||| ||||||||||||||||| |||||||  |||||||| ||||||||||| ||||||  ||| ||||||||    
T  3902 tcctcgacagttaactgccgaggggacaaaaaa-tattttacttgtgtgcctcaaccttatccaatttgtcaaca 3829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 1727 - 1775
Alignment:
Q  90 caaaaacgtattttacctgtgtgcctcagccttatgaaatgtgtcaaca 138  Q
    ||||||||||  ||||  |||||||||||||||||| ||||||||||||    
T  1727 caaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaaca 1775  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 11318 - 11250
Alignment:
Q  65 tcctcggcagttaactgccga-gggacaaaaacgtattttacctgtgtgcctcagccttatgaaatgtg 132  Q
    ||||||||||||||||||||| |||  |||| ||||||||||  ||||| | ||||||||| |||||||    
T  11318 tcctcggcagttaactgccgagggggtaaaatcgtattttactagtgtggcacagccttatcaaatgtg 11250  T

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