View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_6 (Length: 579)
Name: NF3365_low_6
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 8742232 - 8741706
Alignment:
| Q |
18 |
gtttgtatcccacatttttcatcacaaacacaaaaacaacaacctcnnnnnnnnnnnntaacatgacaacaaaaacaaccctcctcttccttttcctcct |
117 |
Q |
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| T |
8742232 |
gtttgtatcccacatttttcatcacaaacacaaaaacaacaacctcaaaaaaaataa-taacatgacaacaaaaacaaccctcctcttcctcttcctcct |
8742134 |
T |
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| Q |
118 |
ccatgtctcggttaccgtagttaactccatcggtgttaactacggtaccttagcagacaacctgccaccaccagcaaccgtagcaaatttcttgaaaaca |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8742133 |
ccatgtctcggttaccgtagttaactccatcggggttaactacggtaccttagcagacaatctgccaccaccagcaaccgtagcaaatttcttgaaaaca |
8742034 |
T |
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| Q |
218 |
aacacgatcgttgatcgtgtaaagatcttcgacgtgagtccacagatccttcaagcttttgctaatacaggaatatctgtaacggttacggcgccaaatg |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
8742033 |
aacacgatcgttgatcgtgttaagatcttcgacgtgagtccacagatccttcaagcttttgctaacacgggaatatctgtaacggttacggcgccaaatg |
8741934 |
T |
|
| Q |
318 |
gggatattgctgcattaggaaatattaattcggcacgtcaatgggtccagcagaagattaaacctttttatcctgctactaagattaattatattcttgt |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741933 |
gggatattgctgcgttaggaaatattaattcggcacgtcaatgggttcagcagaagattaaacctttttatcctgctactaagattaattatattcttgt |
8741834 |
T |
|
| Q |
418 |
tggtagtgaagttcttcattggggtgatggtaatatgattcgtggtcttgttcctgctatgagaactcttcattctgctcttgttgctgagggtattaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8741833 |
tggtagtgaagttcttcattggggtgatggtaatatgattcgtggtcttgttcctgctatgagaactcttcattctgctcttgttgctgagggtattaat |
8741734 |
T |
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| Q |
518 |
gatattaaggtaaatctaattctcatct |
545 |
Q |
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| T |
8741733 |
gatattaaggtaaatctaaatctcatct |
8741706 |
T |
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