View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_62 (Length: 283)
Name: NF3365_low_62
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_62 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 52056288 - 52056560
Alignment:
| Q |
11 |
cacagagttagaatttgagtagataagtaccctacatgagattgtgacaatttagataa-----caagttaaatatcagcttattggtggtggctgtacg |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52056288 |
cacagagttagaatttgagtagagaagtaccctacatgagattgtgacaatttagataatagtacaagttaaatatcagcttattggtggtggctgtacg |
52056387 |
T |
|
| Q |
106 |
acgttatatatctaaaactagaaaaatctgttgtttagtcttaaacgtggaagagtgattacatgcaatggagtgtgagaatatgatattaaaagtatat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52056388 |
acgttatatatctaaaactagaaaaatctgttgtttagtcttaaacgtggaagagtgattacatgcaatggagtgtgagaatatgatattaaaagtata- |
52056486 |
T |
|
| Q |
206 |
tacttcactgtcatcgtcattatcgtcacatctttggccacctagtaattgtctatgtttccttctcaatagca |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52056487 |
tacttcactgtcatcgtcattatcgtcacatctttggccacctagtaattgtctaagtttccttctcaatagca |
52056560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University