View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_67 (Length: 264)
Name: NF3365_low_67
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 37304682 - 37304908
Alignment:
| Q |
22 |
atttaactgcaagaatatagctgcataatcaggagctaacgacaaagttatgcataccataaagagaaatcactcaataagattaacatctcacaggtca |
121 |
Q |
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| T |
37304682 |
atttaactgcaagaatatagctgcataatcaggagctaacaacaaagttatgcataccataaagagaaatcactcaataagattaacacctcacaggtca |
37304781 |
T |
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| Q |
122 |
cattcatatccaacacaggcaatataaacgaatcttccaagcaataagcatgacctcccttc-nnnnnnntcaccttgcaacctgcaaaattatgccggt |
220 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||| |
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| T |
37304782 |
cattcatatccaacacaggcaaaataaacgaatcttccaagcaataagcatgacctcccttcaaaaaaaatcaccttacaacctgcaaaattatgcaggt |
37304881 |
T |
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| Q |
221 |
ccaatctttgctacctggtcaaagcat |
247 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37304882 |
ccaatctttgctacctggtcaaagcat |
37304908 |
T |
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