View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_70 (Length: 253)
Name: NF3365_low_70
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 10819176 - 10819269
Alignment:
| Q |
65 |
agaacgagttacttgaaaacttaagctatataacttataaaatatgcaatatcaaagagggttcacgaagtttctcaagcaaatacttgagtcc |
158 |
Q |
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| T |
10819176 |
agaacaagttacttgaaaacttaagctatataatttataaaatatgcaatatcaaagagtgttcacgaagtttctcaagcaaatacttgagtcc |
10819269 |
T |
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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 10819115 - 10819158
Alignment:
| Q |
6 |
gtcgaagaatattcagcgcaccacattcagagttacttgaaaac |
49 |
Q |
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| T |
10819115 |
gtcgaacaaaattcagcgcaccacattcagagttacttgaaaac |
10819158 |
T |
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