View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_72 (Length: 253)

Name: NF3365_low_72
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_72
NF3365_low_72
[»] chr1 (3 HSPs)
chr1 (78-241)||(12198916-12199079)
chr1 (120-165)||(11910444-11910489)
chr1 (188-224)||(11910408-11910444)
[»] chr4 (1 HSPs)
chr4 (120-233)||(36083830-36083936)
[»] chr6 (2 HSPs)
chr6 (131-184)||(13480050-13480103)
chr6 (194-230)||(9229798-9229834)
[»] chr5 (3 HSPs)
chr5 (124-184)||(12089412-12089472)
chr5 (78-123)||(40107350-40107395)
chr5 (131-183)||(19934836-19934888)
[»] chr7 (1 HSPs)
chr7 (195-230)||(1830350-1830385)
[»] chr8 (1 HSPs)
chr8 (178-230)||(552692-552744)
[»] chr3 (1 HSPs)
chr3 (194-230)||(28723542-28723578)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 12199079 - 12198916
Alignment:
Q  78 ataagactatctactgaatccccaatggacatgggcactgtaatgtgtgtttattttaatcttagtatgttgtttgataagtacaattgttaaacattct 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12199079 ataagactatctactgaatccccaatggacatgggcactgtaatgtgtgtttcttttaatcttagtatgttgtttgataagtacaattgttaaacattct 12198980  T
Q  178 tttgttcatattactaaaatgtttaaaaattgtatcttctataatttatatttataacgctctg 241  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  12198979 tttgttcatattactaaaatgtttaaaaattgtatcttgtataatttatatttataacgttctg 12198916  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 11910489 - 11910444
Alignment:
Q  120 atgtgtgtttattttaatcttagtatgttgtttgataagtacaatt 165  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||    
T  11910489 atgtgtgtttcttttactcttagtatgttgtttgataagtgcaatt 11910444  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 11910444 - 11910408
Alignment:
Q  188 ttactaaaatgtttaaaaattgtatcttctataattt 224  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  11910444 ttactgaaatgtttaaaaattgtatcttgtataattt 11910408  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 120 - 233
Target Start/End: Complemental strand, 36083936 - 36083830
Alignment:
Q  120 atgtgtgtttattttaatcttagtatgttgtttgataagtacaattgttaaacattcttttgttcatattactaaaatgtttaaaaattgtatcttctat 219  Q
    ||||||| || ||||||||||||||||||||||||||||| ||||||||       |||||||||| ||| || ||||||||||||||||||||||||||    
T  36083936 atgtgtggttcttttaatcttagtatgttgtttgataagtgcaattgtt-------cttttgttcaaattgcttaaatgtttaaaaattgtatcttctat 36083844  T
Q  220 aatttatatttata 233  Q
    ||||||||||||||    
T  36083843 aatttatatttata 36083830  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 13480050 - 13480103
Alignment:
Q  131 ttttaatcttagtatgttgtttgataagtacaattgttaaacattcttttgttc 184  Q
    |||||||||||  ||||||| |||| ||| ||||||||||||||||||||||||    
T  13480050 ttttaatcttaaaatgttgtatgatgagtgcaattgttaaacattcttttgttc 13480103  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 9229834 - 9229798
Alignment:
Q  194 aaatgtttaaaaattgtatcttctataatttatattt 230  Q
    |||||||||||||||||||||| || |||||||||||    
T  9229834 aaatgtttaaaaattgtatcttttaaaatttatattt 9229798  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 12089472 - 12089412
Alignment:
Q  124 gtgtttattttaatcttagtatgttgtttgataagtacaattgttaaacattcttttgttc 184  Q
    |||||| ||||||| ||| |||||||| |||| |||  |||||||||||||||||||||||    
T  12089472 gtgtttcttttaattttattatgttgtatgatgagtgtaattgttaaacattcttttgttc 12089412  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 40107350 - 40107395
Alignment:
Q  78 ataagactatctactgaatccccaatggacatgggcactgtaatgt 123  Q
    ||||||| ||||||||||||||| ||| ||||| ||||||||||||    
T  40107350 ataagaccatctactgaatccccgatgaacatgtgcactgtaatgt 40107395  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 19934836 - 19934888
Alignment:
Q  131 ttttaatcttagtatgttgtttgataagtacaattgttaaacattcttttgtt 183  Q
    ||||||| ||| |||| |||||||| ||| |||||||| ||||||||||||||    
T  19934836 ttttaattttattatgatgtttgattagtgcaattgttgaacattcttttgtt 19934888  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 1830350 - 1830385
Alignment:
Q  195 aatgtttaaaaattgtatcttctataatttatattt 230  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1830350 aatgtttaaaaattgtatcttatataatttatattt 1830385  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 552744 - 552692
Alignment:
Q  178 tttgttcatattactaaaatgtttaaaaattgtatcttctataatttatattt 230  Q
    |||||||  ||| ||||||| |||||||| |||||||| ||||||||||||||    
T  552744 tttgttctaattgctaaaatatttaaaaactgtatcttttataatttatattt 552692  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 28723578 - 28723542
Alignment:
Q  194 aaatgtttaaaaattgtatcttctataatttatattt 230  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  28723578 aaatgtttaaaaattgcatcttatataatttatattt 28723542  T

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