View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_77 (Length: 250)
Name: NF3365_low_77
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26833580 - 26833815
Alignment:
| Q |
1 |
cggtcaaatagcttaacgatannnnnnnaaagtgaataagtggatgtttgggatttgaacatcaaaccctacatatattatgcaatattgttatcaactc |
100 |
Q |
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| T |
26833580 |
cggtcaaatagcttaacgatatttttt-aaagtgaataagtgagtgttcggggtttaaacatcaaaccctacatatattatgcaatattgttatcaactg |
26833678 |
T |
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| Q |
101 |
agttaaactcagaagagnnnnnnnnn--ttcatctctttcataatacgagtcactttactaacaaataaaaaactaatacaaaatatgtactaaattata |
198 |
Q |
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| T |
26833679 |
agttaaactcaggagagagaaaaaatattttatctctttcataatacgagtcactttactaacaaataacaaactaatacaaaaaatgcactaaattata |
26833778 |
T |
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| Q |
199 |
ttgattttatcaaaattatagctttgatgattgtaat |
235 |
Q |
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| T |
26833779 |
ttgattttatcaaaattatagctttgatgattgtaat |
26833815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 26365533 - 26365476
Alignment:
| Q |
30 |
aagtgaataagtgg-atgtttgggatttgaacatcaaaccctacatatattatgcaat |
86 |
Q |
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| T |
26365533 |
aagtgaataagtgggatgtctggagttcgaacatcaacccctacatatattatgcaat |
26365476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 34181532 - 34181574
Alignment:
| Q |
69 |
ctacatatattatgcaatattgttatcaactcagttaaactca |
111 |
Q |
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| T |
34181532 |
ctacatataatatgcaatatcgttatcaactgagttaaactca |
34181574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 10320557 - 10320497
Alignment:
| Q |
51 |
ggatttgaacatcaaaccctacatatattatgcaatattgttatcaactcagttaaactca |
111 |
Q |
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||||| |||| ||| ||| ||||||||||||||| |||| ||||||||| || |||||||| |
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| T |
10320557 |
ggattcgaacctcataccttacatatattatgcattattcttatcaactgagctaaactca |
10320497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 18649206 - 18649162
Alignment:
| Q |
67 |
ccctacatatattatgcaatattgttatcaactcagttaaactca |
111 |
Q |
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||||||||| | ||||||||||||||| ||||| ||||||||||| |
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| T |
18649206 |
ccctacataaaatatgcaatattgttaccaactaagttaaactca |
18649162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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