View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_8 (Length: 502)

Name: NF3365_low_8
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_8
NF3365_low_8
[»] chr4 (5 HSPs)
chr4 (88-291)||(36130447-36130649)
chr4 (294-484)||(36130708-36130897)
chr4 (1-48)||(36130348-36130395)
chr4 (1-42)||(29227238-29227279)
chr4 (1-33)||(48494908-48494940)
[»] chr8 (2 HSPs)
chr8 (1-48)||(1068635-1068682)
chr8 (1-33)||(12241116-12241148)
[»] chr7 (1 HSPs)
chr7 (1-48)||(2008853-2008900)
[»] chr6 (2 HSPs)
chr6 (1-48)||(18065085-18065132)
chr6 (1-48)||(33712349-33712396)
[»] chr2 (1 HSPs)
chr2 (1-48)||(37316810-37316857)
[»] chr1 (2 HSPs)
chr1 (1-48)||(27742646-27742693)
chr1 (1-33)||(38878896-38878928)
[»] scaffold0432 (1 HSPs)
scaffold0432 (1-47)||(6515-6561)
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-45)||(28322-28366)
[»] chr3 (1 HSPs)
chr3 (4-48)||(32362962-32363006)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 5e-97; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 88 - 291
Target Start/End: Original strand, 36130447 - 36130649
Alignment:
Q  88 aagaagtttcactagaagatccggcaaccgagagctcaaatagtcatgcaaatttgactgcatcatcagaaagagatagagatacaaaggaaagaaagtt 187  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36130447 aagaagttccactaaaagatc-ggcaaccgagagctcaaatagtcatgcaaatttgactgcatcatcagaaagagatagagatacaaaggaaagaaagtt 36130545  T
Q  188 attgaactctagaattggttgttttccccaaacaaaaaagttcattgtctaatcaaatttcaagacgcaagagtcatctatccagcttcccaaatccaaa 287  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36130546 attgaactctagaattggttgtttttcccaaacaaaaaacttcattgtctaatcaaatttcaagacgcaagagtcatctatccagcttcccaaatccaaa 36130645  T
Q  288 acta 291  Q
    ||||    
T  36130646 acta 36130649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 294 - 484
Target Start/End: Original strand, 36130708 - 36130897
Alignment:
Q  294 aaagaggcaatatccaagtttctatatgctcgaacagtgcataaatcccaccattaagatggagaattaacacctcttcttcatatttgttcctcttttc 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  36130708 aaagaggcaatatccaagtttctatatgctcgaacagtgcataaatcccaccgttaagatggagaattaacacctcttctccatatttgttcctcttttc 36130807  T
Q  394 catatttttctccatatagataatttgctgcaattcttctccttattttttgccctagagaagaactgataatgaactcatttaaagttta 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36130808 catatttttctccatatagataatttgctgcaattcttctccttattttttgccctagagaagaactgataa-gaactcatttaaagttta 36130897  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36130348 - 36130395
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||    
T  36130348 tagaagaacaatgtgtgtatgagagataaagttgtcacaaaagttgtc 36130395  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29227238 - 29227279
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaa 42  Q
    |||||||||||||||| ||||||||| |||||||| ||||||    
T  29227238 tagaagaacaatgtgtgtatgagagagaaagttatcacaaaa 29227279  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48494908 - 48494940
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagtt 33  Q
    |||||||||||||||| ||||||||||||||||    
T  48494908 tagaagaacaatgtgtgtatgagagataaagtt 48494940  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1068682 - 1068635
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  1068682 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtc 1068635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12241148 - 12241116
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagtt 33  Q
    |||||||||||||||||||||| ||||||||||    
T  12241148 tagaagaacaatgtgtatatgaaagataaagtt 12241116  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2008853 - 2008900
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  2008853 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtc 2008900  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18065085 - 18065132
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  18065085 tagaagaacaatgtgtgtatgagagaaaaagttgtcacaaaagttgtc 18065132  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33712396 - 33712349
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  33712396 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtc 33712349  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 37316810 - 37316857
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  37316810 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtc 37316857  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 27742693 - 27742646
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  27742693 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagttgtc 27742646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38878896 - 38878928
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagtt 33  Q
    |||||||||||||||||||||||||| ||||||    
T  38878896 tagaagaacaatgtgtatatgagagagaaagtt 38878928  T

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Target: scaffold0432 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 6515 - 6561
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagttgt 47  Q
    |||||||||||||||  |||||||||||||||| | |||||||||||    
T  6515 tagaagaacaatgtgagtatgagagataaagttgtcacaaaagttgt 6561  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28322 - 28366
Alignment:
Q  1 tagaagaacaatgtgtatatgagagataaagttatgacaaaagtt 45  Q
    |||||||||||||||| ||||||||| |||||| | |||||||||    
T  28322 tagaagaacaatgtgtgtatgagagagaaagttgtcacaaaagtt 28366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 32363006 - 32362962
Alignment:
Q  4 aagaacaatgtgtatatgagagataaagttatgacaaaagttgtc 48  Q
    ||||||||||||| |||||||||||||||| | | ||||||||||    
T  32363006 aagaacaatgtgtgtatgagagataaagttgtcataaaagttgtc 32362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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