View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_80 (Length: 250)
Name: NF3365_low_80
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_80 |
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| [»] scaffold0366 (1 HSPs) |
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| [»] scaffold0459 (1 HSPs) |
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Alignment Details
Target: scaffold0366 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8825 - 9071
Alignment:
| Q |
1 |
aacgtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcatgaannnnnnnggtgaaaaatacatacatacaga----- |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
8825 |
aacgtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcatgaatttttttggtgaaaaatacatacatacatatatac |
8924 |
T |
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| Q |
96 |
---catacaaacatgaataaatttatatataaaagaagcttacccggttccagaagtgagaccagaaatccaattatctttatagtgtactgctcttccc |
192 |
Q |
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| T |
8925 |
atacatacaaacatgaataaatttatatataaaagaagcttacccggttccagaagtgagaccagaaatccaatcatctttatagtgtactgctcttccc |
9024 |
T |
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| Q |
193 |
ctaaaatcatctacaatacccttgaaaggtgttttaaagctcttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9025 |
ctaaaatcatctacaatacccttgaaaggtgttttaaagctcttcat |
9071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8901 - 9147
Alignment:
| Q |
1 |
aacgtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcatgaannnnnnnggtgaaaaatacatacatacaga----- |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
8901 |
aacgtcgcaatattaaaattctcaaagtaactgacaatttcaaaccatgaacacacatgcatgaatttttttggtgaaaaatacatacatacatatatac |
9000 |
T |
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| Q |
96 |
---catacaaacatgaataaatttatatataaaagaagcttacccggttccagaagtgagaccagaaatccaattatctttatagtgtactgctcttccc |
192 |
Q |
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| T |
9001 |
atacatacaaacatgaataaatttatatataaaagaagcttacccggttccagaagtgagaccagaaatccaatcatctttatagtgtactgctcttccc |
9100 |
T |
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| Q |
193 |
ctaaaatcatctacaatacccttgaaaggtgttttaaagctcttcat |
239 |
Q |
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| T |
9101 |
gtaaaatcatctacaatacccttgaaaggtgttttaaagctcttcat |
9147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 117 - 239
Target Start/End: Original strand, 12319171 - 12319294
Alignment:
| Q |
117 |
atatataaaagaagcttacccggttccagaagtgagaccagaaatccaattatctttatagtgtactgctcttcccctaaaatcatctacaatacccttg |
216 |
Q |
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| T |
12319171 |
atatataaaagaagcttacccggttcctgaggcgagacctgaaatccaatcatctttatagtgtactgctcttcccctaaaatcatctacaatacccttg |
12319270 |
T |
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| Q |
217 |
aaagg-tgttttaaagctcttcat |
239 |
Q |
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||||| | |||||||||||||||| |
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| T |
12319271 |
aaaggtttttttaaagctcttcat |
12319294 |
T |
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