View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_81 (Length: 249)

Name: NF3365_low_81
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_81
NF3365_low_81
[»] chr4 (8 HSPs)
chr4 (65-232)||(4874859-4875027)
chr4 (170-232)||(4874013-4874075)
chr4 (65-117)||(4874084-4874136)
chr4 (91-129)||(4893757-4893795)
chr4 (65-124)||(4883937-4883994)
chr4 (151-191)||(4893694-4893734)
chr4 (171-205)||(4646422-4646456)
chr4 (82-126)||(4646334-4646378)
[»] chr1 (1 HSPs)
chr1 (91-129)||(9112571-9112609)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 232
Target Start/End: Complemental strand, 4875027 - 4874859
Alignment:
Q  65 gaagaatttaaatccgatctacctcttctcggtttcaattagctctattaggaaattaatcaagctt-gcaatnnnnnnnnnnnnttatatgtgtgactt 163  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||            | |||||||||||||    
T  4875027 gaagaatttaaatccgatctacctcctctcggtttcaattagctctattaggaaattaatcaagcttggcaataaaaagaaaaaatgatatgtgtgactt 4874928  T
Q  164 ttttcggtataaggtcacacctacactcgatgatgaaggacccatatagcgtacaactatgccttcttt 232  Q
    ||||  ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||| ||||||    
T  4874927 ttttgagtataaggtcacacccacactcgatgatgaaggacctgtatagcgtacaactatgctttcttt 4874859  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 4874075 - 4874013
Alignment:
Q  170 gtataaggtcacacctacactcgatgatgaaggacccatatagcgtacaactatgccttcttt 232  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4874075 gtataaggtcacacctacagtcgatgatgaaggacctatatagcgtacaactatgccttcttt 4874013  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 4874136 - 4874084
Alignment:
Q  65 gaagaatttaaatccgatctacctcttctcggtttcaattagctctattagga 117  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4874136 gaagaatttaaatccgatctacctcatctcggtttcaattatctctattagga 4874084  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 4893795 - 4893757
Alignment:
Q  91 tctcggtttcaattagctctattaggaaattaatcaagc 129  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4893795 tctcggtttcaattagctctattaggaaattaatcaagc 4893757  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 4883994 - 4883937
Alignment:
Q  65 gaagaatttaaatccgatctacctcttctcggtttcaattagctctattaggaaattaat 124  Q
    ||||||||| |||||  |||||||| ||||||||||||||||| ||||||||||||||||    
T  4883994 gaagaatttgaatcc--tctacctcatctcggtttcaattagccctattaggaaattaat 4883937  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 4893734 - 4893694
Alignment:
Q  151 atatgtgtgacttttttcggtataaggtcacacctacactc 191  Q
    |||||||||||||||||| ||||||||||||||| ||||||    
T  4893734 atatgtgtgacttttttcagtataaggtcacacccacactc 4893694  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 4646422 - 4646456
Alignment:
Q  171 tataaggtcacacctacactcgatgatgaaggacc 205  Q
    |||||||||||||| ||||||||||||||||||||    
T  4646422 tataaggtcacacccacactcgatgatgaaggacc 4646456  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 4646334 - 4646378
Alignment:
Q  82 tctacctcttctcggtttcaattagctctattaggaaattaatca 126  Q
    |||||||| | || |||||||||||| ||||||||||||||||||    
T  4646334 tctacctcctgtcagtttcaattagccctattaggaaattaatca 4646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 9112571 - 9112609
Alignment:
Q  91 tctcggtttcaattagctctattaggaaattaatcaagc 129  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  9112571 tctcgatttcaattagccctattaggaaattaatcaagc 9112609  T

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