View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_84 (Length: 248)
Name: NF3365_low_84
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26286869 - 26286635
Alignment:
| Q |
1 |
taattgcattttagatggagtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26286869 |
taattgcattttagatggagtcagcactgttgcagtctgtgaggagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgtt |
26286770 |
T |
|
| Q |
101 |
gtctggacaaatgaggctgccttgcctagttattgtttattagatgaatgcgcattctatatc---agatatttcgttggttgtgtttccatatggtatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26286769 |
gtctggacaaatgaggctgccttgcctagttattgtttatgagacgaatgcgcattctatatcagaagatatttcgttggttgtgtttccatatggtatg |
26286670 |
T |
|
| Q |
198 |
gacagaattgcattgatgctttgcttggttatata |
232 |
Q |
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|||||||||||||| ||| |||||||||||||||| |
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| T |
26286669 |
gacagaattgcattcatgttttgcttggttatata |
26286635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 7202596 - 7202396
Alignment:
| Q |
15 |
atggagtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctggacaaatga |
114 |
Q |
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||||||||||||||| ||||||||||||| || | |||| ||||| | ||||| |||||||| | || || ||||||||||||| ||||||||||| |
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| T |
7202596 |
atggagtcagcactgctgcagtctgtgaggagcttgaaatctctttcactttccatttagatttattatattatgaagatcttgtt---tggacaaatga |
7202500 |
T |
|
| Q |
115 |
ggctgccttgcctagttattgtttattagatgaatgcgcattctatatcagatatttcgttggttgtgtttccatatggtatggacagaattgcattgat |
214 |
Q |
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| T |
7202499 |
ggctgccatgcctagttattggttatgagatgaatgcacattgtatatcagatattacgttggctgtgtttgcatatggtatggacagagttgcattgat |
7202400 |
T |
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| Q |
215 |
gctt |
218 |
Q |
| |
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|||| |
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| T |
7202399 |
gctt |
7202396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 7191261 - 7191118
Alignment:
| Q |
88 |
tgaagatcttgttgtctggacaaatgaggctgccttgcctagttattgtttattagatgaatgcgcattctatatcag--atatttcgttggttgtgttt |
185 |
Q |
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|||| |||||||||||||||||| ||||||| | ||||||||||||| |||| |||||||||| |||| |||||||| ||||||||||| |||| | |
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| T |
7191261 |
tgaatatcttgttgtctggacaac-gaggctgacatgcctagttattggttataagatgaatgcacattgtatatcagatatatttcgttgcctgtgata |
7191163 |
T |
|
| Q |
186 |
ccatatggtatggacagaattgcattgatgctttgcttggttatat |
231 |
Q |
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| T |
7191162 |
gcatatggtatggacagagttacattgatgc-ttgtttggttatat |
7191118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 7184045 - 7183894
Alignment:
| Q |
91 |
agatcttgttgtctggacaaatgaggctgccttgcctagttattgtttattagatgaatgcgcat-------tctatatcag--atatttcgttggttgt |
181 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||| ||| | |||||||| |||||| ||| ||||| |
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| T |
7184045 |
agatcttgttgtctggacaaatgaggctgtcatgcctagttattggttatgagatgaatgcacatttcacactgtatatcagatatattttgttagttgt |
7183946 |
T |
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| Q |
182 |
gtttccatatggtatggacag-aattgcattgatgctttgcttggttatatat |
233 |
Q |
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| || ||||| ||||||||| |||||||||||||| |||||||||||||||| |
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| T |
7183945 |
gcttgaatatgatatggacagcaattgcattgatgc-ttgcttggttatatat |
7183894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 7191356 - 7191288
Alignment:
| Q |
12 |
tagatggagtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagattatt |
80 |
Q |
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||||||||||| |||||| ||||||||||||| || ||||||| ||||| | ||||||||||||||||| |
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| T |
7191356 |
tagatggagtcggcactgctgcagtctgtgaggagctggaaagctctttcactttccttttagattatt |
7191288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 7197676 - 7197584
Alignment:
| Q |
18 |
gagtcagcactgttgcagtctgtgagaagt--tggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctggac |
108 |
Q |
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|||||||||||| |||| |||||||| || ||| ||| ||||| | ||||| ||||||||||| || || ||||||||||||||||||||| |
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| T |
7197676 |
gagtcagcactgctgcattctgtgaggagagctgggaagctctttcattttccatttagattatttatattatgaagatcttgttgtctggac |
7197584 |
T |
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