View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_9 (Length: 488)
Name: NF3365_low_9
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 39 - 488
Target Start/End: Original strand, 43636173 - 43636623
Alignment:
| Q |
39 |
cagtaacatgtctagttttttatgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttacaaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43636173 |
cagtaacatgtctagttttttatgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttatcaa |
43636272 |
T |
|
| Q |
139 |
catgttccatgatttagttgattatgaaatgaacaaaa-atgactcnnnnnnnctaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga |
237 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43636273 |
catgttccatgatttagttgattatgcaatgaacaaaagattactcaaaaaaactaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga |
43636372 |
T |
|
| Q |
238 |
aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaagaacc |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43636373 |
aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaagaacc |
43636472 |
T |
|
| Q |
338 |
tctttgatgttttttgttgcatttgtattaatcttttgaatattagtttgagtctctaaaccagcaagaggttttccaacattccctcctcttggcgaga |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43636473 |
tctttgatgttttttgttgcatttgtattaatcttttgaatattagtttgagtctctaaaccagcaagaggttttccaacattccctcctcttggcgaga |
43636572 |
T |
|
| Q |
438 |
acaaactacctccttcagatccatcattcatagaaaaactccatttcttag |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43636573 |
acaaactacctccttcagatccatcattcatagagaaactccatttcttag |
43636623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University