View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_92 (Length: 241)
Name: NF3365_low_92
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_92 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 20029173 - 20028965
Alignment:
| Q |
16 |
atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029173 |
atcgcacctaatacgatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc |
20029074 |
T |
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| Q |
116 |
acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029073 |
acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
20028974 |
T |
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| Q |
216 |
gtggctatt |
224 |
Q |
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||||||||| |
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| T |
20028973 |
gtggctatt |
20028965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 20513375 - 20513168
Alignment:
| Q |
16 |
atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc |
115 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20513375 |
atcgcacctaatacgatccaaactaactcacaaatcagatgaacataatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagc |
20513277 |
T |
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| Q |
116 |
acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20513276 |
acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
20513177 |
T |
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| Q |
216 |
gtggctatt |
224 |
Q |
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||||||||| |
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| T |
20513176 |
gtggctatt |
20513168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 6637570 - 6637641
Alignment:
| Q |
131 |
gaccagacttaatctcacaa--caagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaa |
200 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
6637570 |
gaccggacttaatctcacaaaacaagactgaaaccactttgtttttaatctctttgcctagcgaaaaacaaa |
6637641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 13370462 - 13370663
Alignment:
| Q |
22 |
cctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagcacagtt |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13370462 |
cctaatacgatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagcacagtt |
13370560 |
T |
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| Q |
122 |
agaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctcgtggct |
221 |
Q |
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| T |
13370561 |
agaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctcgtggct |
13370660 |
T |
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| Q |
222 |
att |
224 |
Q |
| |
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||| |
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| T |
13370661 |
att |
13370663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 52615048 - 52614949
Alignment:
| Q |
20 |
cacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagcacag |
119 |
Q |
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|||||||||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
52615048 |
cacctaatacgattcaaactaactcacaaatcagatgaaca-aatacctgaattgagcagagtttgaatccaaaaaacaatc-ttgtttcgcaagcacag |
52614951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 34358 - 34151
Alignment:
| Q |
16 |
atcgcacctaatacaatccaaactaactcacaaatcagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctttgttttgcaagc |
115 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34358 |
atcgcacctaatatgatccaaactaactcacaaataagatgaacacaatacatgaattgagcagagtttgaatccaaaaaacaacctt-gttttgcaagc |
34260 |
T |
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| Q |
116 |
acagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
215 |
Q |
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| T |
34259 |
aaagttagaacaagagaccagacttaatctcacaacaagactgaaaccacttttattttaatctctttgcctagtgaaaagcaaaaatataagtattctc |
34160 |
T |
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| Q |
216 |
gtggctatt |
224 |
Q |
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||||||||| |
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| T |
34159 |
gtggctatt |
34151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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