View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_98 (Length: 236)
Name: NF3365_low_98
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 1165961 - 1166110
Alignment:
| Q |
72 |
tataacggtgtacaagattactatccaatttttcctctcaaaaagaagattagcatccaaatttaatttgagtcaatcttaaatctcaagtaattctaca |
171 |
Q |
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| T |
1165961 |
tataacggtgtacaagattactatccaatttttcctctcaaaaagaagattagcatccaaatttaatttgagtcaatcttaaatctcaagtaattctaca |
1166060 |
T |
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| Q |
172 |
taaacttgacactataaatacttctaatacacatgctataacatcataac |
221 |
Q |
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| T |
1166061 |
tagactcgacactataaatacttctaatacacatgctataacatcataac |
1166110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 16848082 - 16848232
Alignment:
| Q |
72 |
tataacggtgtacaagattactatccaatttttcctctc-----aaaaagaa--gattagcatccaaatttaatttgagtcaatcttaaatctcaagtaa |
164 |
Q |
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| T |
16848082 |
tataacgatgcacaagattactatccaatttttccttaacaaaaaaaaagaaaagattatcatccaa-tttaatttgagtcaatcttaaaccccaagcaa |
16848180 |
T |
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| Q |
165 |
ttctacataaacttgacactataaatacttctaatacacatgctataacatca |
217 |
Q |
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| T |
16848181 |
ttctacataaactcgacattataaatactt-gcatacacatgctataacatca |
16848232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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