View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3366_high_1 (Length: 636)
Name: NF3366_high_1
Description: NF3366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3366_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 7 - 618
Target Start/End: Original strand, 39980735 - 39981346
Alignment:
| Q |
7 |
ggagcagagacagtaagtaactactacagaaaggagcaaatgagtctgacaaaagagatcagaaagtgttgaatcagtgcttcagaaaaacaaaacagca |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980735 |
ggagcaaagacagtaagtaactactacagaaaggagcaaatgagtctgacaaaagagatcagaaagtgttgaatcagtgcttcagaaaaacaaaacagca |
39980834 |
T |
|
| Q |
107 |
acatgggaggatcttctgcagatcttcatcatcatgaatcagatatagaactcattgctcctgagaacagcacaaagttaagcactactgagtccaaatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980835 |
acatgggaggatcttctgcagatcttcatcatcatgaatcagatatagaactcattgctcctgagaacagcacaaagttaagcactactgagtccaaatc |
39980934 |
T |
|
| Q |
207 |
tgtcacagatattgaccataacatagaagaagatgcagactatgttgaggtgaccatggacattcaaggtgactctgttgccttacacagtgtgaaaact |
306 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39980935 |
tgtcacagatgttgaccataacatagaagaagatgcagactatgttgaggtgaccatggacattcaaggtgactctgttgccttacacagtgtgaaaact |
39981034 |
T |
|
| Q |
307 |
gtaacagaaagtgacatgggagaaggggaacatgagaaacagtctttgactgggaataagttggagaagaagaaatcctttggtgcttcagtggttcaaa |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39981035 |
gtaacagaaagtgacatgggagaaggggaacatgagaaacagtctttgactgggaataagttggagaagaagaaatcctttggtgcttcagtggttcaaa |
39981134 |
T |
|
| Q |
407 |
atgctactattcgtataaagcagctgaagcgtttggcatcgttttcaaaaccagaaccagcaaagcgattggaaaggaccaagtctgcggtggctcatgc |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39981135 |
atgctactattcgtataaagcagctgaagcgtttggcatcgttttcaaaaccagaaccagcaaagcgattggaaaggaccaagtctgcggtggctcatgc |
39981234 |
T |
|
| Q |
507 |
tctcactggactcaagtttatcagcaagactgatgttggtgcaggatggtctgaagttgagaaagtgtttgataagcttaccgtgacaactgacggttat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39981235 |
tctcactggactcaagtttatcagcaagactgatgttggtgcaggatggtctgaagttgagaaagtgtttgataagcttaccgtgacaactgacggttat |
39981334 |
T |
|
| Q |
607 |
cttcctcgcact |
618 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39981335 |
cttcctcgcact |
39981346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 44912801 - 44912847
Alignment:
| Q |
262 |
atggacattcaaggtgactctgttgccttacacagtgtgaaaactgt |
308 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
44912801 |
atggatattcaaggtgactctgttgctttacacagtgttaaaactgt |
44912847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University