View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3366_high_2 (Length: 242)
Name: NF3366_high_2
Description: NF3366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3366_high_2 |
 |  |
|
| [»] scaffold0667 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 9321307 - 9321515
Alignment:
| Q |
16 |
agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
115 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9321307 |
agagagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
9321406 |
T |
 |
| Q |
116 |
aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgattgatgttgtcggattccataatgtc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9321407 |
aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcagcgattgatgttgtcggattccataatgtc |
9321506 |
T |
 |
| Q |
216 |
agggatagg |
224 |
Q |
| |
|
||||||||| |
|
|
| T |
9321507 |
agggatagg |
9321515 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 9283971 - 9283827
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||| ||| |||| ||| ||||||||||| |||||||| |
|
|
| T |
9283971 |
ggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggagtt |
9283872 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||| ||||| |
|
|
| T |
9283871 |
tgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcata |
9283827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 8573284 - 8573150
Alignment:
| Q |
30 |
actgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgagg |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | || |||||| ||||||||||||||||||||| ||| ||| ||| | ||||||||||||||| |||| |
|
|
| T |
8573284 |
actgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggagg |
8573185 |
T |
 |
| Q |
130 |
agtttgtaatcgctggttaaaggatcaaaaccgaa |
164 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| |
|
|
| T |
8573184 |
agtttgtaatcggcggttaatagatcaaaaccgaa |
8573150 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 7115420 - 7115276
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||| |||| |
|
|
| T |
7115420 |
ggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagagattctgagaagtt |
7115321 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||| ||||| |
|
|
| T |
7115320 |
tgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcata |
7115276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 9060934 - 9060772
Alignment:
| Q |
16 |
agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
115 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||||||||||||| | || ||||| ||||||||||||||||||||| ||| ||| ||| ||||| |
|
|
| T |
9060934 |
agagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataacc |
9060835 |
T |
 |
| Q |
116 |
aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
||| |||||||||||||||||||||| ||| || |||||||||||||| || |||||||||| |
|
|
| T |
9060834 |
aagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata |
9060772 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 9328945 - 9329137
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtg---tggagaggctaaccaagagattctgagga |
130 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||| | || || | || | | |||| ||||| ||||| ||||||||||| |
|
|
| T |
9328945 |
ggaattattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaagcgattctgagga |
9329044 |
T |
 |
| Q |
131 |
gtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgattgatgttgtcggattccataatgtcagggatag |
223 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||| |||||||||||| || | |||| ||||||||| ||||| | ||||| |||||||| |
|
|
| T |
9329045 |
gtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatgttagggatag |
9329137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 184
Target Start/End: Original strand, 10353470 - 10353620
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
||||||| |||||| ||||||||||| | ||||||||||||||||||| ||||||||||| ||| ||| || | || ||||||||||||||||| |
|
|
| T |
10353470 |
ggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagtt |
10353569 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagc |
184 |
Q |
| |
|
||||||||| || || || |||||||||||| ||||||||||||||||||| |
|
|
| T |
10353570 |
tgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagc |
10353620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 9292262 - 9292421
Alignment:
| Q |
16 |
agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
115 |
Q |
| |
|
|||| |||| ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| || |||| |||| ||||||| ||| | ||||| || |
|
|
| T |
9292262 |
agagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtctcacctgtggatca---aaagagtaatgtaggtcggctatcc |
9292358 |
T |
 |
| Q |
116 |
aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||| ||||||| || |||||||||| |
|
|
| T |
9292359 |
aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata |
9292421 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 9274846 - 9275000
Alignment:
| Q |
16 |
agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
115 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| || |||||||| ||| | ||||||| |
|
|
| T |
9274846 |
agagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattc---aaaagagtaatgtatatcagctaacc |
9274942 |
T |
 |
| Q |
116 |
aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaac |
173 |
Q |
| |
|
| ||||||||||| ||||| ||||||| || ||||||||||||||| ||||| ||||| |
|
|
| T |
9274943 |
atgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac |
9275000 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 9316359 - 9316521
Alignment:
| Q |
16 |
agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc |
115 |
Q |
| |
|
|||| |||| ||| |||||||||| ||||||||||||||||||| | || ||||| |||||||||||||||||||||||| || | ||| | || |
|
|
| T |
9316359 |
agagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatcc |
9316458 |
T |
 |
| Q |
116 |
aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| | |||||||||||||| || |||||||||| |
|
|
| T |
9316459 |
aagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcata |
9316521 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 9357606 - 9357676
Alignment:
| Q |
108 |
ggctaaccaagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata |
178 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
9357606 |
ggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata |
9357676 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 10372219 - 10372365
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
|||||||| ||||||||||| | ||| || |||||||||| ||||||| ||||||||||| | | || | | ||| |||||||||||||||||| |
|
|
| T |
10372219 |
ggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagagattctgaggagtt |
10372318 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataag |
180 |
Q |
| |
|
||| ||||| || ||||| |||||||||||| ||||||||||||||| |
|
|
| T |
10372319 |
tgtgatcgccggataaagaatcaaaaccgaagccatgaacgcataag |
10372365 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 10336271 - 10336338
Alignment:
| Q |
112 |
aaccaagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| | |||||||||||| || ||||||||||| |
|
|
| T |
10336271 |
aaccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa |
10336338 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 10348140 - 10348291
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
|||||||| ||||| ||||||||||| | ||||||||||| || |||| ||||||||||| ||| ||| || | ||| ||| ||||||||||||| |
|
|
| T |
10348140 |
ggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagtt |
10348239 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagca |
185 |
Q |
| |
|
||||||| | || || ||||||||||||| || |||||||||||| |||| |
|
|
| T |
10348240 |
tgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagca |
10348291 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 12012319 - 12012274
Alignment:
| Q |
42 |
tttccacgagtttgttttagaactgaagagtctgacatgtgaatca |
87 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||| |
|
|
| T |
12012319 |
tttccacgagtttgttttcgaggtgaagagtctgacatatgaatca |
12012274 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 4832 - 4983
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
|||||||||||||||||||| ||||| | || |||||||| ||||||| ||||||||||| ||| ||| ||||| |||||||||||| |||||||| || |
|
|
| T |
4832 |
ggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattt |
4931 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagca |
185 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
4932 |
tgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagca |
4983 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 37462841 - 37462997
Alignment:
| Q |
28 |
aaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctga |
127 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||| ||| ||| || | | |||||||||||||| |
|
|
| T |
37462841 |
aaactaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctga |
37462940 |
T |
 |
| Q |
128 |
ggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagc |
184 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
37462941 |
ggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagc |
37462997 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 26575222 - 26575379
Alignment:
| Q |
34 |
ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt |
133 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||||| ||||||| ||||||||||| ||| ||| || | || |||||||||||||||||| |
|
|
| T |
26575222 |
ggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtt |
26575321 |
T |
 |
| Q |
134 |
tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgatt |
191 |
Q |
| |
|
||||||||| || ||||| |||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
26575322 |
tgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgatt |
26575379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 41966507 - 41966362
Alignment:
| Q |
31 |
ctgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgagga |
130 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || || || ||||||||||||||| || |||| ||| || |||||||||||||||||| |
|
|
| T |
41966507 |
ctgggaattattttccacgagttgtttttagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgagga |
41966408 |
T |
 |
| Q |
131 |
gtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgca |
176 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
41966407 |
gtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca |
41966362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 29453086 - 29452967
Alignment:
| Q |
42 |
tttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcg |
141 |
Q |
| |
|
|||||||||||| |||| || ||||||||||| |||||||||||| || ||||| |||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
29453086 |
tttccacgagttcattttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcg |
29452987 |
T |
 |
| Q |
142 |
ctggttaaaggatcaaaacc |
161 |
Q |
| |
|
| |||| ||||||||||| |
|
|
| T |
29452986 |
acgtttaacggatcaaaacc |
29452967 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 29443027 - 29442961
Alignment:
| Q |
115 |
caagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagc |
181 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| || |||||||||||||| || |||| ||| |||| |
|
|
| T |
29443027 |
caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaatgcaaaagc |
29442961 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 29467489 - 29467424
Alignment:
| Q |
115 |
caagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagc |
181 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||||||||||||| || |||||||| |||| |
|
|
| T |
29467489 |
caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgcaaaagc |
29467424 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University