View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3366_low_3 (Length: 242)

Name: NF3366_low_3
Description: NF3366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3366_low_3
NF3366_low_3
[»] chr2 (15 HSPs)
chr2 (16-224)||(9321307-9321515)
chr2 (34-178)||(9283827-9283971)
chr2 (30-164)||(8573150-8573284)
chr2 (34-178)||(7115276-7115420)
chr2 (16-178)||(9060772-9060934)
chr2 (34-223)||(9328945-9329137)
chr2 (34-184)||(10353470-10353620)
chr2 (16-178)||(9292262-9292421)
chr2 (16-173)||(9274846-9275000)
chr2 (16-178)||(9316359-9316521)
chr2 (108-178)||(9357606-9357676)
chr2 (34-180)||(10372219-10372365)
chr2 (112-179)||(10336271-10336338)
chr2 (34-185)||(10348140-10348291)
chr2 (42-87)||(12012274-12012319)
[»] scaffold0667 (1 HSPs)
scaffold0667 (34-185)||(4832-4983)
[»] chr3 (1 HSPs)
chr3 (28-184)||(37462841-37462997)
[»] chr4 (1 HSPs)
chr4 (34-191)||(26575222-26575379)
[»] chr8 (1 HSPs)
chr8 (31-176)||(41966362-41966507)
[»] chr1 (3 HSPs)
chr1 (42-161)||(29452967-29453086)
chr1 (115-181)||(29442961-29443027)
chr1 (115-181)||(29467424-29467489)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 9321307 - 9321515
Alignment:
16 agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 115  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
9321307 agagagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 9321406  T
116 aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgattgatgttgtcggattccataatgtc 215  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
9321407 aagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcataagcagcagcgattgatgttgtcggattccataatgtc 9321506  T
216 agggatagg 224  Q
    |||||||||    
9321507 agggatagg 9321515  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 9283971 - 9283827
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||| ||| ||||  ||| ||||||||||| ||||||||    
9283971 ggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggagtt 9283872  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    ||||||||| ||||||||||||||||||||| || |||| |||||    
9283871 tgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcata 9283827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 8573284 - 8573150
Alignment:
30 actgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgagg 129  Q
    |||||||||| |||||||||||||||||||  | || |||||| ||||||||||||||||||||| ||| ||| ||| | ||||||||||||||| ||||    
8573284 actgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggagg 8573185  T
130 agtttgtaatcgctggttaaaggatcaaaaccgaa 164  Q
    ||||||||||||  ||||||  |||||||||||||    
8573184 agtttgtaatcggcggttaatagatcaaaaccgaa 8573150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 7115420 - 7115276
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    ||||| ||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||||  |||||  |  |||||||||||||||||| ||||    
7115420 ggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagagattctgagaagtt 7115321  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    |||||||    |||||||||||||||||||| || |||| |||||    
7115320 tgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcata 7115276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 9060934 - 9060772
Alignment:
16 agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 115  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||  | || ||||| |||||||||||||||||||||  ||| ||| |||    |||||    
9060934 agagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataacc 9060835  T
116 aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    ||| ||||||||||||||||||||||  ||| || |||||||||||||| || ||||||||||    
9060834 aagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 9328945 - 9329137
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtg---tggagaggctaaccaagagattctgagga 130  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||| | || || | ||  | |    ||||  ||||| ||||| |||||||||||    
9328945 ggaattattttccaagagtttgttttagagttgaagagtctgacatgtggaacaaaagaggatctttcatttggatcggctatccaagcgattctgagga 9329044  T
131 gtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgattgatgttgtcggattccataatgtcagggatag 223  Q
    |||||||||| | || ||||||||||||||||||||| |||||||||||| || | |||| ||||||||| ||||| | ||||| ||||||||    
9329045 gtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagattcaagaatgttagggatag 9329137  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 184
Target Start/End: Original strand, 10353470 - 10353620
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    ||||||| |||||| |||||||||||  | ||||||||||||||||||| ||||||||||| ||| ||| ||  |   ||   |||||||||||||||||    
10353470 ggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagtt 10353569  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagc 184  Q
    ||||||||| || || || |||||||||||| |||||||||||||||||||    
10353570 tgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagc 10353620  T

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Target: chr2; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 9292262 - 9292421
Alignment:
16 agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 115  Q
    |||| |||| ||| ||| ||||| |||||||||||||| ||||| || ||||||||||| || |||| ||||   |||||||  ||| |   ||||| ||    
9292262 agagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtctcacctgtggatca---aaagagtaatgtaggtcggctatcc 9292358  T
116 aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||| || ||||||||||    
9292359 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 9274846 - 9275000
Alignment:
16 agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 115  Q
    |||| |||| ||| ||||||||||||||||||||||||||||||  | ||||||||||| |||||||| ||   ||||||||  |||  |   |||||||    
9274846 agagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtgattc---aaaagagtaatgtatatcagctaacc 9274942  T
116 aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaac 173  Q
    | ||||||||||| ||||| ||||||| || ||||||||||||||| ||||| |||||    
9274943 atgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 9316359 - 9316521
Alignment:
16 agagagtaccgcaaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaacc 115  Q
    |||| |||| ||| |||||||||| |||||||||||||||||||  | || ||||| ||||||||||||||||||||||||   ||   |  ||| | ||    
9316359 agagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaagagcaatgaccatcggccatcc 9316458  T
116 aagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    |||| |||||||||||||||||||| |  ||| | |||||||||||||| || ||||||||||    
9316459 aagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcata 9316521  T

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Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 9357606 - 9357676
Alignment:
108 ggctaaccaagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcata 178  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||    
9357606 ggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

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Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 10372219 - 10372365
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    |||||||| ||||||||||| | ||| || ||||||||||  ||||||| ||||||||||| | | ||  |   |  |||  ||||||||||||||||||    
10372219 ggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgattaagtaagagattctgaggagtt 10372318  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataag 180  Q
    ||| ||||| || ||||| |||||||||||| |||||||||||||||    
10372319 tgtgatcgccggataaagaatcaaaaccgaagccatgaacgcataag 10372365  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 10336271 - 10336338
Alignment:
112 aaccaagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataa 179  Q
    ||||||||||||||||||||||||||||||  || ||| | |||||||||||| || |||||||||||    
10336271 aaccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcataa 10336338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 10348140 - 10348291
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    |||||||| ||||| |||||||||||  | ||||||||||| || |||| ||||||||||| ||| ||| ||  |  |||   ||| |||||||||||||    
10348140 ggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagtt 10348239  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagca 185  Q
    ||||||| | || ||   ||||||||||||| || |||||||||||| ||||    
10348240 tgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcataaggagca 10348291  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 12012319 - 12012274
Alignment:
42 tttccacgagtttgttttagaactgaagagtctgacatgtgaatca 87  Q
    |||||||||||||||||| ||  ||||||||||||||| |||||||    
12012319 tttccacgagtttgttttcgaggtgaagagtctgacatatgaatca 12012274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 185
Target Start/End: Original strand, 4832 - 4983
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    |||||||||||||||||||| |||||  | || |||||||| ||||||| ||||||||||| ||| ||| ||||| |||||||||||| |||||||| ||    
4832 ggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattt 4931  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagca 185  Q
    ||||||||| ||||||||||||||||||||| || |||||||||||| ||||    
4932 tgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcataaggagca 4983  T

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Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 37462841 - 37462997
Alignment:
28 aaactgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctga 127  Q
    ||||| |||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||| ||| ||| ||  |   | ||||||||||||||    
37462841 aaactaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctga 37462940  T
128 ggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagc 184  Q
    ||||||||||||||| |||||||| |||||||||||| || ||||||||||||||||    
37462941 ggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagc 37462997  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 26575222 - 26575379
Alignment:
34 ggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtt 133  Q
    |||||||||||||| |||||||||||  | ||||||||||| ||||||| ||||||||||| ||| ||| ||  |   ||  ||||||||||||||||||    
26575222 ggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtt 26575321  T
134 tgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagcagcaacgatt 191  Q
    ||||||||| || ||||| |||||||||||| || |||||||||||||||| ||||||    
26575322 tgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgatt 26575379  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 176
Target Start/End: Complemental strand, 41966507 - 41966362
Alignment:
31 ctgggaattattttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgagga 130  Q
    |||||||||||||||||||||||  ||||||| || || || ||||||||||||||| ||  ||||   ||| ||       ||||||||||||||||||    
41966507 ctgggaattattttccacgagttgtttttagagctaaatagcctgacatgtgaatcaaaagtagagagttgttgatcaaaagaccaagagattctgagga 41966408  T
131 gtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgca 176  Q
    |||||| |||||||||||| |||||||||||||| || ||||||||    
41966407 gtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 29453086 - 29452967
Alignment:
42 tttccacgagtttgttttagaactgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcg 141  Q
    ||||||||||||  |||| || ||||||||||| |||||||||||| ||  |||||  ||||||    | |  |||||||||||||||||||||||||||    
29453086 tttccacgagttcattttcgagctgaagagtctcacatgtgaatcagaagtagagtattgtggatcaacgatacaagagattctgaggagtttgtaatcg 29452987  T
142 ctggttaaaggatcaaaacc 161  Q
      | |||| |||||||||||    
29452986 acgtttaacggatcaaaacc 29452967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 29443027 - 29442961
Alignment:
115 caagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagc 181  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||||||| || |||| ||| ||||    
29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaatgcaaaagc 29442961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 29467489 - 29467424
Alignment:
115 caagagattctgaggagtttgtaatcgctggttaaaggatcaaaaccgaaaccatgaacgcataagc 181  Q
    |||||||||||||| |||||||||||   |||||| |||||||||||||| || |||||||| ||||    
29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgcaaaagc 29467424  T

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