View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3367-Insertion-1 (Length: 668)

Name: NF3367-Insertion-1
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3367-Insertion-1
NF3367-Insertion-1
[»] chr8 (8 HSPs)
chr8 (7-250)||(9335508-9335751)
chr8 (284-389)||(9336150-9336255)
chr8 (401-622)||(9336587-9336802)
chr8 (501-631)||(8209354-8209484)
chr8 (302-371)||(8209157-8209226)
chr8 (324-371)||(9937755-9937802)
chr8 (247-277)||(9336026-9336056)
chr8 (18-96)||(9942098-9942176)
[»] chr1 (3 HSPs)
chr1 (499-631)||(42365179-42365311)
chr1 (324-371)||(42364927-42364974)
chr1 (31-101)||(42364073-42364143)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 9335508 - 9335751
Alignment:
Q  7 actttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaaccatatga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335508 actttcatcatgttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaaccatatga 9335607  T
Q  107 tttaaatatgcaaatgatccagtcagtagcggtcactagaggccaatatgaaatacaatgtacgggtttttgcaaaaacctgccacaagggccagtaact 206  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9335608 tttaaatatgcaaatgatccattcagtagcggtcaccagaggccaatatgaaatacaatgtacaggtttttgcaaaaacctgctacaagggccagtaact 9335707  T
Q  207 caattcagtcatatggaaacataaatgatgaatgaaatcctcaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9335708 caattcagtcatatggaaacataaatgatgaatgaaatcctcaa 9335751  T

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Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 9336150 - 9336255
Alignment:
Q  284 aagtagaaatcaagtattaaattattatcacctctccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 383  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336150 aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 9336249  T
Q  384 acattc 389  Q
    ||||||    
T  9336250 acattc 9336255  T

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Target: chr8; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 401 - 622
Target Start/End: Original strand, 9336587 - 9336802
Alignment:
Q  401 agtctttttgaaaaattgacctacaaaattcaaaattcaaactccacccaaatcacatcactgtaaaacgcaaaaaccctaactggccaaaaacagaaac 500  Q
    ||||||||||| ||| |||||||| | ||||||| ||| |||||||||||||||||      || ||| |||||||||||| ||  |||||||| |||||    
T  9336587 agtctttttgagaaaatgacctaccagattcaaagttctaactccacccaaatcacc-----gttaaaagcaaaaaccctaccta-ccaaaaactgaaac 9336680  T
Q  501 actaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttcat 600  Q
    | ||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||| ||||||| ||| | |||||||      
T  9336681 attaaccgaattcaaggatgcgagggtccttaggatcgatgatggatttacagatagaagccaaatcgatattcgcttcacttcgcacctcccagttcga 9336780  T
Q  601 atgaaaaagacgatcctcccat 622  Q
    ||||||||||| ||||| ||||    
T  9336781 atgaaaaagactatccttccat 9336802  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 501 - 631
Target Start/End: Original strand, 8209354 - 8209484
Alignment:
Q  501 actaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttcat 600  Q
    |||||||||||| |   |||||||| || ||||||||||||||||||| | ||| |||||| ||||| ||||| || ||| |||  |||||||||||| |    
T  8209354 actaaccgaattgacgaatgcgaggatcgttaggatcggtgatggagtgaaagagagaagctaaatcgatattggcgtcatttctgactttccagttctt 8209453  T
Q  601 atgaaaaagacgatcctcccatgtaagtttc 631  Q
     ||| |||||||||||||||||| |||||||    
T  8209454 gtgagaaagacgatcctcccatgcaagtttc 8209484  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 8209157 - 8209226
Alignment:
Q  302 aaattattatcacctctccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 371  Q
    ||||||| |||||||| | || ||||||||||||||  |||||||||||||||| |||||||||||||||    
T  8209157 aaattatgatcacctcgcagcgtcagcatctgcagcatgcaagtaagcaatcaatgcatcaagtgccttc 8209226  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 9937755 - 9937802
Alignment:
Q  324 tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 371  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9937755 tcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttc 9937802  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 247 - 277
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
Q  247 tcaaattcactcaaataaaaaatgttaaata 277  Q
    |||||||||||||||||||||||||||||||    
T  9336026 tcaaattcactcaaataaaaaatgttaaata 9336056  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 9942098 - 9942176
Alignment:
Q  18 gttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatg 96  Q
    |||||| ||||||||||||||||||  | |||||| |||| || |||||||||| ||| |||| | |||||| ||||||    
T  9942098 gttctacaaactcaattcctaaacttgcatcagtttacaacctctagattttgagcaaaattacagaataaagcaaatg 9942176  T

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Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 499 - 631
Target Start/End: Original strand, 42365179 - 42365311
Alignment:
Q  499 acactaaccgaattcaatgatgcgagggtccttaggatcggtgatggagttacagaaagaagccaaatcaatattcgcctcacttcccactttccagttc 598  Q
    ||||||||||||||||  |||||||||||| |||||||||||||| |||| ||||| |||||||| ||||||||| || ||| ||| ||||||||||||     
T  42365179 acactaaccgaattcacggatgcgagggtctttaggatcggtgattgagtcacagagagaagccagatcaatattggcttcatttcgcactttccagttt 42365278  T
Q  599 atatgaaaaagacgatcctcccatgtaagtttc 631  Q
     | ||| |||||||||||||||||| |||||||    
T  42365279 ttgtgagaaagacgatcctcccatggaagtttc 42365311  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 42364927 - 42364974
Alignment:
Q  324 tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 371  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  42364927 tcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttc 42364974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 42364073 - 42364143
Alignment:
Q  31 aattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaacca 101  Q
    ||||||||||||| | |||||| | | ||| |||||||||||||| |||| ||||||||||||||| ||||    
T  42364073 aattcctaaactcgcatcagtttaaacactctagattttgaacaaaattacaaaataaatcaaatgcacca 42364143  T

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