View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367-Insertion-2 (Length: 590)
Name: NF3367-Insertion-2
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 472
Target Start/End: Complemental strand, 36458506 - 36458064
Alignment:
| Q |
12 |
tttggacggaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcgg |
111 |
Q |
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| T |
36458506 |
tttggacagaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgggcgg |
36458407 |
T |
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| Q |
112 |
tcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgca |
211 |
Q |
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| T |
36458406 |
tcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcactatgca |
36458307 |
T |
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| Q |
212 |
cgcaggggtgttatttggtttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattac |
311 |
Q |
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| T |
36458306 |
cgcaggggtgttatttgggttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgttattac |
36458207 |
T |
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| Q |
312 |
tttaatgtctatattactactttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattatccaa |
411 |
Q |
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| T |
36458206 |
tttaatgtctatattactactttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattatccaa |
36458124 |
T |
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| Q |
412 |
ccaatggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
472 |
Q |
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| T |
36458123 |
ccaatggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 473 - 590
Target Start/End: Complemental strand, 36457924 - 36457807
Alignment:
| Q |
473 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
572 |
Q |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
573 |
ttttcggtctgctaccta |
590 |
Q |
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| T |
36457824 |
ttttcggtctgctaccta |
36457807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
114 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
188 |
Q |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
114 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
174 |
Q |
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| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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