View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3367-Insertion-3 (Length: 585)
Name: NF3367-Insertion-3
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Original strand, 52273668 - 52274153
Alignment:
| Q |
8 |
tattcttatccccggattcttctattgtcttctctggaaccctggcgtcaagttcatcgtccatagattcaaactccaaaaccctcttcgcacccaaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52273668 |
tattcttatccccggattcttctattgtcttctctggaaccctggcgtcaagttcatcgtccatagattcaaactccaaaaccctcttcgcacccaaatc |
52273767 |
T |
|
| Q |
108 |
gttttcctcaactgtgtcagtaacattttcaccacccaagctttcaacttcagggacagatcctctaattgacacctccaagccagaattctgttcggat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52273768 |
gttttcctcaactgtgtcagtaacattttcaccacccaagctttcaacttcagggacagatcctctaattgacacctccaagccagaattctgttcggat |
52273867 |
T |
|
| Q |
208 |
ccagagaatttgattggggacgaaaagggaagaggattttctgaaaccctagatgccttcttcaaacgcttaagctttcgttcgatgacgggagaagaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52273868 |
ccagagaatttgattggggacgaaaaggggagaggattttctgaaaccctagatgccttcttcaaacgcttaagctttcgttcgatgacgggagaagaag |
52273967 |
T |
|
| Q |
308 |
gtaaggcttcgaaatcttcgtcgctatccatgtttgattctgagatctgaacgacactttttggttttggaaacaaaggctttaaccttgtcgaattaaa |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52273968 |
gtaaggcttcgaaatcttcgtcgctatccatgtttgattctgagatctgaacgacactttttggttttggaaacaaaggctttaaccttatcgaattaaa |
52274067 |
T |
|
| Q |
408 |
acggatcgtgaaatggttctagtccaaacctaacctaaataaatggcggtaaatttgtttgaaaattctat--aaacgcgccatac |
491 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52274068 |
acggatcgtgaaatggttctagtctaaacctaacctaaataaatggcggtaaatttgtttgaaaattctataaaaacgcgccatac |
52274153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 541 - 585
Target Start/End: Original strand, 52274203 - 52274247
Alignment:
| Q |
541 |
aatttaatttaattttgcacatgttaatttagctaggtatacggg |
585 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52274203 |
aatttaatttaattttgcacatgttaatttagctaggtatacggg |
52274247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University