View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3367-Insertion-4 (Length: 581)

Name: NF3367-Insertion-4
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3367-Insertion-4
NF3367-Insertion-4
[»] chr7 (3 HSPs)
chr7 (6-432)||(19506726-19507153)
chr7 (432-581)||(19507182-19507331)
chr7 (160-230)||(39158632-39158702)
[»] chr2 (1 HSPs)
chr2 (246-312)||(41846293-41846358)
[»] chr3 (1 HSPs)
chr3 (206-297)||(52015929-52016022)
[»] chr8 (5 HSPs)
chr8 (206-281)||(37768617-37768694)
chr8 (188-258)||(28712924-28712996)
chr8 (188-258)||(28720271-28720343)
chr8 (188-258)||(28727913-28727985)
chr8 (162-306)||(9797445-9797591)
[»] chr6 (1 HSPs)
chr6 (157-201)||(6770939-6770983)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 6 - 432
Target Start/End: Original strand, 19506726 - 19507153
Alignment:
Q  6 caatctcttctcttgctttcttgaaaacatgtgggtttcttattagttctgctagtgcccattctaatacacttgctggtccatttgttcctgcaatgaa 105  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19506726 caatctcttctcttgctttcttgaaaacatgtggatttcttattagttctgctagtgcccattctaatacacttgctggtccatttgttcctgcaatgaa 19506825  T
Q  106 catgtcctgttgaacaaacacattaagcaatatgttaaatataccgtaaaattaagggtcttgctaatgaacgcccttagggcattggttaaggaagtag 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  19506826 catgtcctgttgaacaaacacattaagcaatatgttaaatataccgtaaaattaagggtcttgctaatgagtgcccttaggacattggttaaggaagtag 19506925  T
Q  206 taaaagaaaactttgttttgaaaatttaacttttgcaacgtagacaattaaaaatataatgattacacatttttcccataaaaatttacctcttttgtct 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19506926 taaaagaaaactttgttttgaaaatttaacttttgcagcgtagacgattaaaaatataatgattacaca-ttttcccataaaaatttacctcttttgtct 19507024  T
Q  306 tcataaataatactct-acgatacttgttggtattcgactaaaactaaaacaagttgatacaaatttgtgtatcataacacgtgtatggtcccct-nnnn 403  Q
    || ||||||||||||| |||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||         
T  19507025 tcttaaataatactctaacggcacttgttggtattcgactaaaactaaaacaagtagatacaaatttgtgtatcataacacatgtatggtcccctaaaaa 19507124  T
Q  404 nnnncacctgaatgcacatattaccaact 432  Q
        |||||||||||||||||||||||||    
T  19507125 aaaacacctgaatgcacatattaccaact 19507153  T

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Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 432 - 581
Target Start/End: Original strand, 19507182 - 19507331
Alignment:
Q  432 tgtatgtggtagttacaactgtcaaccgtccgatcgaaataaacagccgagatcgaattatgcggtaaaatgagctgaaatctgaaccatttgatcttaa 531  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  19507182 tgtatgtggtagttacaactgccaaccgtccgatcgaaataaacagccgagatcgtattatgcggtaaaatgagttgaaatctgaaccattcgatcttaa 19507281  T
Q  532 atcaacacttgagataagctgcaacatgggaccgcatgaaaacactacag 581  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||    
T  19507282 atcaacacttgagataagttacaacatgggaccgcatgaaaacactacag 19507331  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 39158632 - 39158702
Alignment:
Q  160 agggtcttgctaatgaacgcccttagggcattggttaaggaagtagtaaaagaaaactttgttttgaaaat 230  Q
    ||||||||||||||||  ||||| |||||||||||||||||| |  |||||| ||| ||||| | ||||||    
T  39158632 agggtcttgctaatgagtgccctaagggcattggttaaggaacttataaaaggaaaatttgtctcgaaaat 39158702  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 41846293 - 41846358
Alignment:
Q  246 tagacaattaaaaatataatgattacacatttttcccataaaaatttacctcttttgtcttcataaa 312  Q
    ||||||||||||||||||||||||||| |  ||||  ||||||||||||||||||||||||| ||||    
T  41846293 tagacaattaaaaatataatgattacata-atttcttataaaaatttacctcttttgtcttcttaaa 41846358  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 52015929 - 52016022
Alignment:
Q  206 taaaagaaaactttgttttgaaaatttaa----cttttgcaacgtagacaattaaaaatataatgattacacatttttcccataaaaatttacctc 297  Q
    |||||| |||||||||||||||||| |||     ||||||||| || |||||| ||||| |||||||  ||||||||  |||||||||||||||||    
T  52015929 taaaaggaaactttgttttgaaaatataatttttttttgcaacttaaacaattgaaaatttaatgatagcacatttt--ccataaaaatttacctc 52016022  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 37768694 - 37768617
Alignment:
Q  206 taaaagaaaactttgttttgaaaatttaactttt--gcaacgtagacaattaaaaatataatgattacacatttttcc 281  Q
    |||||||||||||| || | ||||||||||||||  ||||| || |||||| ||||| || || ||||||||||||||    
T  37768694 taaaagaaaactttattctcaaaatttaactttttcgcaacttaaacaattcaaaatgtagtgtttacacatttttcc 37768617  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 28712924 - 28712996
Alignment:
Q  188 cattggttaaggaagtagtaaaagaaaactttgttttgaaaatttaacttt--tgcaacgtagacaattaaaa 258  Q
    ||||| ||||| ||||| |||||| |||| |||| || |||||||||||||  |||||| |||||||||||||    
T  28712924 cattgtttaagaaagtattaaaaggaaacattgtcttcaaaatttaacttttatgcaacttagacaattaaaa 28712996  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 28720271 - 28720343
Alignment:
Q  188 cattggttaaggaagtagtaaaagaaaactttgttttgaaaatttaacttt--tgcaacgtagacaattaaaa 258  Q
    ||||| ||||| ||||| |||||| |||| |||| || |||||||||||||  |||||| |||||||||||||    
T  28720271 cattgtttaagaaagtattaaaaggaaacattgtcttcaaaatttaacttttatgcaacttagacaattaaaa 28720343  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 28727913 - 28727985
Alignment:
Q  188 cattggttaaggaagtagtaaaagaaaactttgttttgaaaatttaacttt--tgcaacgtagacaattaaaa 258  Q
    ||||| ||||| ||||| |||||| |||| |||| || |||||||||||||  |||||| |||||||||||||    
T  28727913 cattgtttaagaaagtattaaaaggaaacattgtcttcaaaatttaacttttatgcaacttagacaattaaaa 28727985  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 9797445 - 9797591
Alignment:
Q  162 ggtcttgctaatgaacgcccttagggcattggttaaggaagtag-taaaagaaaactttgttttgaaaatttaacttttg--caacgtagacaattaaaa 258  Q
    ||||||||||| |||  | |||||| ||||||||||  || | | ||||||||||||||   |||||||||||||||||   |||  || |||||| |||    
T  9797445 ggtcttgctaacgaatactcttaggacattggttaaaaaaattgataaaagaaaactttaaattgaaaatttaacttttttacaagataaacaattcaaa 9797544  T
Q  259 atataatgattacacatttttcccataaaaatttacctcttttgtctt 306  Q
     | || |||||||||||||| || ||||||||||||||  ||||||||    
T  9797545 ctgtattgattacacatttt-ccaataaaaatttacctgatttgtctt 9797591  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 6770983 - 6770939
Alignment:
Q  157 ttaagggtcttgctaatgaacgcccttagggcattggttaaggaa 201  Q
    ||||||||||||||||  |  ||||||||||||||||||||||||    
T  6770983 ttaagggtcttgctaaccagtgcccttagggcattggttaaggaa 6770939  T

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