View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367-Insertion-9 (Length: 195)
Name: NF3367-Insertion-9
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367-Insertion-9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 78; Significance: 1e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 42518444 - 42518367
Alignment:
| Q |
118 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatat |
195 |
Q |
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| T |
42518444 |
ctcatcaaattaattaattgaaatctaaacaatcgtgtacctatgaaaaaatcttaacaatctaaggaatgataatat |
42518367 |
T |
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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 42518533 - 42518478
Alignment:
| Q |
64 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
119 |
Q |
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| T |
42518533 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaattagtataatact |
42518478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 64 - 195
Target Start/End: Complemental strand, 42509087 - 42508940
Alignment:
| Q |
64 |
cacaagagagaattaatgtgtcaaattaagtgtgcataatgaa-----------ttagtataatactcatcaaattaattaattgaaatctaaacaatcg |
152 |
Q |
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| T |
42509087 |
cacaagagagaattaatgtgtcgaattaagtgtgcataatgaaattatactacattagt-tatttctcatcaaattaattaattgaaatctaaacaatcg |
42508989 |
T |
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| Q |
153 |
tgtacct------atgaaaaaatcttaacaatctaaggaatgataatat |
195 |
Q |
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| T |
42508988 |
tgtacttaaaaaaaaaaaaaaatcttaacaatataaggaatgataatat |
42508940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 42509301 - 42509237
Alignment:
| Q |
8 |
gtacttttacaacatttgttttcttaaacat-cagatactcgt---agagtacaactcaacacaa |
68 |
Q |
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| T |
42509301 |
gtacttttacaacgtttgttttcttaaacatactgaaactcgtagaagagtacaactcaacacaa |
42509237 |
T |
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