View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3367R-Insertion-1 (Length: 975)

Name: NF3367R-Insertion-1
Description: NF3367R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3367R-Insertion-1
NF3367R-Insertion-1
[»] chr7 (2 HSPs)
chr7 (8-953)||(31260300-31261251)
chr7 (510-578)||(8745871-8745939)
[»] chr4 (21 HSPs)
chr4 (772-832)||(4375034-4375094)
chr4 (772-833)||(12172831-12172892)
chr4 (772-833)||(12174181-12174242)
chr4 (772-833)||(12174847-12174908)
chr4 (772-833)||(12175189-12175250)
chr4 (772-833)||(12177396-12177457)
chr4 (772-833)||(12182113-12182174)
chr4 (772-832)||(52268735-52268795)
chr4 (772-833)||(12179300-12179361)
chr4 (772-833)||(12180539-12180600)
chr4 (772-833)||(12185022-12185083)
chr4 (772-833)||(12185366-12185427)
chr4 (772-833)||(12187014-12187075)
chr4 (772-833)||(12189008-12189069)
chr4 (506-594)||(9928753-9928841)
chr4 (774-833)||(12170125-12170184)
chr4 (794-836)||(12894211-12894253)
chr4 (772-833)||(12178633-12178694)
chr4 (772-833)||(12184016-12184077)
chr4 (772-833)||(12187358-12187419)
chr4 (772-829)||(12189351-12189408)
[»] chr8 (1 HSPs)
chr8 (772-829)||(38136621-38136678)
[»] chr6 (3 HSPs)
chr6 (772-833)||(16477142-16477203)
chr6 (775-833)||(16476715-16476773)
chr6 (776-833)||(15052289-15052346)
[»] chr5 (5 HSPs)
chr5 (772-833)||(3153540-3153601)
chr5 (772-833)||(21825707-21825768)
chr5 (516-577)||(6423983-6424044)
chr5 (781-833)||(25904796-25904848)
chr5 (536-578)||(42042303-42042345)
[»] chr2 (52 HSPs)
chr2 (772-833)||(24620819-24620880)
chr2 (772-833)||(24621142-24621203)
chr2 (772-833)||(24621465-24621526)
chr2 (772-833)||(24621749-24621810)
chr2 (772-833)||(24622068-24622129)
chr2 (772-833)||(24622387-24622448)
chr2 (772-833)||(24622671-24622732)
chr2 (772-833)||(24622955-24623016)
chr2 (772-833)||(24623274-24623335)
chr2 (772-833)||(24623558-24623619)
chr2 (772-833)||(24623877-24623938)
chr2 (772-833)||(24624470-24624531)
chr2 (772-833)||(24624789-24624850)
chr2 (772-833)||(24625073-24625134)
chr2 (772-833)||(24625392-24625453)
chr2 (772-833)||(24625715-24625776)
chr2 (772-833)||(24626034-24626095)
chr2 (772-833)||(24626358-24626419)
chr2 (772-833)||(24626681-24626742)
chr2 (772-833)||(24626965-24627026)
chr2 (772-833)||(24627284-24627345)
chr2 (772-833)||(24627568-24627629)
chr2 (772-833)||(24630883-24630944)
chr2 (772-833)||(24631167-24631228)
chr2 (772-833)||(24631451-24631512)
chr2 (772-833)||(24632054-24632115)
chr2 (772-833)||(24632338-24632399)
chr2 (772-833)||(24632657-24632718)
chr2 (772-833)||(24632941-24633002)
chr2 (772-833)||(24633225-24633286)
chr2 (772-833)||(24633544-24633605)
chr2 (772-833)||(24633863-24633924)
chr2 (772-833)||(24634147-24634208)
chr2 (772-833)||(24634466-24634527)
chr2 (772-833)||(24634750-24634811)
chr2 (772-833)||(24635302-24635363)
chr2 (772-833)||(24635625-24635686)
chr2 (772-833)||(24636326-24636387)
chr2 (772-833)||(24636649-24636710)
chr2 (772-833)||(24636972-24637033)
chr2 (772-833)||(24637574-24637635)
chr2 (772-833)||(24637897-24637958)
chr2 (772-833)||(24638510-24638571)
chr2 (772-833)||(24638829-24638890)
chr2 (772-833)||(24639148-24639209)
chr2 (772-833)||(24639501-24639562)
chr2 (772-833)||(24639824-24639885)
chr2 (772-833)||(24640147-24640208)
chr2 (506-567)||(30841549-30841610)
chr2 (772-833)||(24631770-24631831)
chr2 (516-567)||(18203108-18203159)
chr2 (772-833)||(3348116-3348177)
[»] chr3 (10 HSPs)
chr3 (506-578)||(50196898-50196970)
chr3 (506-577)||(30130787-30130858)
chr3 (772-833)||(16990035-16990096)
chr3 (506-567)||(30135507-30135568)
chr3 (506-567)||(30141636-30141697)
chr3 (506-567)||(30145058-30145119)
chr3 (793-832)||(35898673-35898712)
chr3 (653-719)||(20995596-20995662)
chr3 (772-833)||(3732648-3732709)
chr3 (510-567)||(42643057-42643114)
[»] chr1 (2 HSPs)
chr1 (514-567)||(28843220-28843273)
chr1 (512-574)||(370787-370848)
[»] scaffold1024 (1 HSPs)
scaffold1024 (772-827)||(1-56)


Alignment Details
Target: chr7 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 8 - 953
Target Start/End: Original strand, 31260300 - 31261251
Alignment:
Q  8 acaaatgactcacatactcagatcacttatcatagacttcagtaatagatcaataaaattcattactgctaagttgtttacataagccataatttttcag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260300 acaaatgactcacatactcagatcacttatcatagacttcagtaatagatcaataaaattcattactgctaagttgtttacataagccataatttttcag 31260399  T
Q  108 ctggagcttttggatacgtgtcaatacacagatgggtctacgtcagaaagatctatcaggnnnnnnngataatattaaaaataaaaattcaacgtagatc 207  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  31260400 ctggagcttttggatacgtgtcaata------tgggtctacgtcagaaagatctatcaggtttttttgataatattaaaaataaaaattcaacgtagatc 31260493  T
Q  208 atccatcacacacacttgtacactttatgcagttaaaccttcactcataataataaatacagcccactacattgtaaatgcagttatccaccactacttt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31260494 atccatcacacacacttgtacactttatgcagttaaaccttcactcataataataaatacagcccactacattgtaaatgcagttatccaccactactat 31260593  T
Q  308 tctatacagtcaacattttgttttttccactcatactcatactcataataataatcatgcatttctcccataaatgcataaaaaggcgtttctgagctta 407  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260594 tctatacagtcaacattttgttttttccactcatactcataatcataataataatcatgcatttctcccataaatgcataaaaaggcgtttctgagctta 31260693  T
Q  408 tttgatgtctacaaaaagggtgatccagagtggacctagatcgacagtaggagttgtggaagtataacgatcaatgggggtaattttggaggagtgtt-a 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  31260694 tttgatgtctacaaaaagggtgatccagagtggacctagatcgacagtaggagttgtggaagtataacgatcaatggaggtaattttggaggagtgttga 31260793  T
Q  507 taggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaacatggaacaaat 606  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||  |||||||||||||||||||    
T  31260794 taggcttgaatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacggtccgagaacttgagcaacatggaacaaat 31260893  T
Q  607 aataaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaaccagctcacataccat 706  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31260894 aacaaaccgcaaacaacttaccaacttcaacaccactcacgtttagcgtgagccggggtccaattcccaaattgcaatccttaaccagctcacataccat 31260993  T
Q  707 gttaaataggcttcgataagtgcaacacaagacttctcaagagatcactcactattattctagttcaagcacgtttaactgcagagttctgatgagatcc 806  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31260994 gttaaataggcttagataagtgcaacacaagacttctcaagagatcactcactattactctagttcaagcacgtttaactgcagagttctgatgagatcc 31261093  T
Q  807 gatacattagtgttggtatgatcgcacttt------------tcaatcactggataaacaaacgcaaacaacattctcagacttttggaggaactcaacg 894  Q
    | ||||||||||||| ||||||||||||||             |||||| || |||||||||| ||||| ||||||||| |||||||   ||||||||||    
T  31261094 ggtacattagtgttgatatgatcgcactttcaatcaaaagaaccaatcattgaataaacaaac-caaac-acattctcaaacttttg--agaactcaacg 31261189  T
Q  895 gcgaaagcaaaagagtag-taaaagcagatc-aaccatgctc-aatg-atttgtgatcgaaga 953  Q
    |||||||| ||||||||| |||| ||||||| |||||||||| |||| |||||||||||||||    
T  31261190 gcgaaagc-aaagagtagttaaaggcagatcgaaccatgctcaaatgaatttgtgatcgaaga 31261251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 510 - 578
Target Start/End: Original strand, 8745871 - 8745939
Alignment:
Q  510 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||||||||||||| |||| |||| ||||| |||||||||| || |||||||||||| ||||||||||    
T  8745871 gcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttatacactcaacagt 8745939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 772 - 832
Target Start/End: Original strand, 4375034 - 4375094
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgca 832  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||||| |||||||||||||    
T  4375034 caagcatgcttaactgcagagttctgatgatatccgatgcattagtgctggtatgatcgca 4375094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12172831 - 12172892
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12172831 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12174181 - 12174242
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12174181 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12174242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12174847 - 12174908
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12174847 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12174908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12175189 - 12175250
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12175189 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12175250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12177396 - 12177457
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12177396 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12177457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12182113 - 12182174
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||||||||||||||| |||||| | |||||||| || |||||||||||    
T  12182113 caagcacgcttaactgcagagttctgatgggatccggtgcattagtgctgatatgatcgcac 12182174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 772 - 832
Target Start/End: Original strand, 52268735 - 52268795
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgca 832  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| |||||||||||||    
T  52268735 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgca 52268795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12179300 - 12179361
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||| ||| |||||||| ||||||| ||| |||||| | |||||||||||||||||||||||    
T  12179300 caagaacgcttaactgcggagttctaatgggatccggtgcattagtgttggtatgatcgcac 12179361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12180539 - 12180600
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||||||||||| ||| |||||| | |||||||| || |||||||||||    
T  12180539 caagcacgcttaactgcagagttctaatgggatccggtgcattagtgctgatatgatcgcac 12180600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12185022 - 12185083
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||| ||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12185022 caagcacgcttaattgctgagttctgatgggatccggtgcattagtgctggtatgatcgcac 12185083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12185366 - 12185427
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||| ||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12185366 caagcacgcttaattgctgagttctgatgggatccggtgcattagtgctggtatgatcgcac 12185427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12187014 - 12187075
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||| ||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12187014 caagcacgcttaattgctgagttctgatgggatccggtgcattagtgctggtatgatcgcac 12187075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12189008 - 12189069
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||  |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  12189008 caagcacaattaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 12189069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 506 - 594
Target Start/End: Original strand, 9928753 - 9928841
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagttcgaaaatctgagcaa 594  Q
    ||||||||| |||| |||| ||||||||| |||||  || ||| || ||||||||||||||| ||||||||   || ||||||||||||    
T  9928753 ataggcttgtatctaatcccaaaaattagcttaaaaaattagggtactcaaacatatttatacactcaacaacccggaaatctgagcaa 9928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 774 - 833
Target Start/End: Original strand, 12170125 - 12170184
Alignment:
Q  774 agcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||| |||||||||||||||||||| |||||| | ||| |||| |||||||| |||||    
T  12170125 agcacgcttaactgcagagttctgatgggatccggtgcatcagtgctggtatgaacgcac 12170184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 794 - 836
Target Start/End: Original strand, 12894211 - 12894253
Alignment:
Q  794 tctgatgagatccgatacattagtgttggtatgatcgcacttt 836  Q
    |||||||| ||||| | ||||||||||||||||||||||||||    
T  12894211 tctgatgaaatccggtgcattagtgttggtatgatcgcacttt 12894253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12178633 - 12178694
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| || |||| ||||||    
T  12178633 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctgatatggtcgcac 12178694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12184016 - 12184077
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    ||||||||  ||||||| ||||||||||| |||||| | |||||||| || |||||||||||    
T  12184016 caagcacgcgtaactgcggagttctgatgggatccggtgcattagtgctgatatgatcgcac 12184077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 12187358 - 12187419
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||| ||| ||||||||||| | |||| | |||||||| ||||||||||||||    
T  12187358 caagcacgcttaattgctgagttctgatgggctccggtgcattagtgctggtatgatcgcac 12187419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 829
Target Start/End: Original strand, 12189351 - 12189408
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatc 829  Q
    |||||||  |||||||| ||||||||||| |||||| | |||||||| ||||||||||    
T  12189351 caagcacaattaactgcggagttctgatgggatccggtgcattagtgatggtatgatc 12189408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 829
Target Start/End: Complemental strand, 38136678 - 38136621
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatc 829  Q
    |||||||||||||||||  ||||||||||||||||| ||||||| | |||||||||||    
T  38136678 caagcacgtttaactgcgaagttctgatgagatccggtacattaatattggtatgatc 38136621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 16477142 - 16477203
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| || ||||||||||||||||| |||||| | |||||||| ||||||||||||||    
T  16477142 caagcacgcttgactgcagagttctgatgggatccggtgcattagtgctggtatgatcgcac 16477203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 775 - 833
Target Start/End: Original strand, 16476715 - 16476773
Alignment:
Q  775 gcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    ||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  16476715 gcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 16476773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 776 - 833
Target Start/End: Complemental strand, 15052346 - 15052289
Alignment:
Q  776 cacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    ||||||||||||||||||||||||| |||| |||  |||| || ||||||||||||||    
T  15052346 cacgtttaactgcagagttctgatgggatctgatgtattactgctggtatgatcgcac 15052289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 3153540 - 3153601
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  3153540 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 3153601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Complemental strand, 21825768 - 21825707
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| || ||||||||||||||||| |||||| | |||||||| ||||||||||||||    
T  21825768 caagcacgcttgactgcagagttctgatgggatccggtgcattagtgctggtatgatcgcac 21825707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 516 - 577
Target Start/End: Complemental strand, 6424044 - 6423983
Alignment:
Q  516 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 577  Q
    ||||||||| ||||| ||| ||||| ||||| |||| ||||||||||||||| |||||||||    
T  6424044 atctcatcctaaaaactagcttaaaagatgatgatactcaaacatatttatacactcaacag 6423983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 781 - 833
Target Start/End: Original strand, 25904796 - 25904848
Alignment:
Q  781 ttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  25904796 ttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 25904848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 536 - 578
Target Start/End: Complemental strand, 42042345 - 42042303
Alignment:
Q  536 ttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||||||||| |||| ||||||||||||||| ||||||||||    
T  42042345 ttaaatgatgaagatactcaaacatatttatacactcaacagt 42042303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 52)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24620819 - 24620880
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24620819 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24620880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24621142 - 24621203
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24621142 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24621203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24621465 - 24621526
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24621465 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24621526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24621749 - 24621810
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24621749 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24621810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24622068 - 24622129
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24622068 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24622129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24622387 - 24622448
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24622387 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24622448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24622671 - 24622732
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24622671 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24622732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24622955 - 24623016
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24622955 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24623016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24623274 - 24623335
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24623274 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24623335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24623558 - 24623619
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24623558 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24623619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24623877 - 24623938
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24623877 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24623938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24624470 - 24624531
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24624470 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24624531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24624789 - 24624850
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24624789 caagcacgcttaactgcggagttctgatgggatccgctgcattagtgctggtatgatcgcac 24624850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24625073 - 24625134
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24625073 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24625134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24625392 - 24625453
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24625392 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24625453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24625715 - 24625776
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24625715 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24625776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24626034 - 24626095
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24626034 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24626095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24626358 - 24626419
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24626358 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24626419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24626681 - 24626742
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24626681 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24626742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24626965 - 24627026
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24626965 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24627026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24627284 - 24627345
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24627284 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24627345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24627568 - 24627629
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24627568 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24627629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24630883 - 24630944
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24630883 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24630944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24631167 - 24631228
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24631167 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24631228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24631451 - 24631512
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24631451 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24631512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24632054 - 24632115
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24632054 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24632338 - 24632399
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24632338 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24632399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24632657 - 24632718
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24632657 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24632718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24632941 - 24633002
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24632941 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24633002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24633225 - 24633286
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24633225 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24633286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24633544 - 24633605
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24633544 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24633605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24633863 - 24633924
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24633863 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24633924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24634147 - 24634208
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24634147 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24634208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24634466 - 24634527
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24634466 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24634527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24634750 - 24634811
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24634750 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24635302 - 24635363
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24635302 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24635363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24635625 - 24635686
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24635625 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24635686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24636326 - 24636387
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24636326 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24636387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24636649 - 24636710
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24636649 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24636710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24636972 - 24637033
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24636972 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24637033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24637574 - 24637635
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24637574 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24637635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24637897 - 24637958
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24637897 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24637958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24638510 - 24638571
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24638510 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24638571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24638829 - 24638890
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24638829 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24638890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24639148 - 24639209
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24639148 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24639209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24639501 - 24639562
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24639501 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24639562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24639824 - 24639885
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24639824 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24639885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24640147 - 24640208
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||||||||    
T  24640147 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatgatcgcac 24640208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30841549 - 30841610
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||| ||||||||||||| | || |||||||||| |||||||||| |||||||||||||||    
T  30841549 ataggtttggatctcatcccacaagttagtttaaaggatgaggatactcaaacatatttata 30841610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 24631770 - 24631831
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | ||||||||  |||||||||||||    
T  24631770 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgcnggtatgatcgcac 24631831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 516 - 567
Target Start/End: Original strand, 18203108 - 18203159
Alignment:
Q  516 atctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||| |||| |||||| ||||||||||| |||| |||||||||||||    
T  18203108 atctcatcctaaaagttagttcaaatgatgagggtatttaaacatatttata 18203159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 3348116 - 3348177
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||| | |||||||| |||||    
T  3348116 caagcacgcttaactgcggagttctgatgggatccggtgcattagcgctggtatgaccgcac 3348177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 506 - 578
Target Start/End: Complemental strand, 50196970 - 50196898
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacagt 578  Q
    ||||| ||||||||||||| |||| |||| | ||| ||||||| |||| ||||||||||||| ||||||||||    
T  50196970 ataggtttggatctcatcccaaaagttagctcaaaggatgagggtatttaaacatatttatacactcaacagt 50196898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 506 - 577
Target Start/End: Original strand, 30130787 - 30130858
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaacag 577  Q
    ||||| ||||||||||||| ||||| ||| | ||||||||| |||| |||| |||||||||| |||||||||    
T  30130787 ataggtttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacag 30130858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 772 - 833
Target Start/End: Complemental strand, 16990096 - 16990035
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    ||||||||||||||||| ||||||||||| |||||| |  ||| ||| ||||||||||||||    
T  16990096 caagcacgtttaactgcggagttctgatgggatccggtggattggtgctggtatgatcgcac 16990035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30135507 - 30135568
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30135507 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30141636 - 30141697
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30141636 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30141697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 30145058 - 30145119
Alignment:
Q  506 ataggcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||||||| |||| |||| | ||||||||||| || |||| ||||||||||    
T  30145058 ataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttata 30145119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 832
Target Start/End: Original strand, 35898673 - 35898712
Alignment:
Q  793 ttctgatgagatccgatacattagtgttggtatgatcgca 832  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  35898673 ttctgatgggatccgatacattagtgttgatatgatcgca 35898712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 653 - 719
Target Start/End: Complemental strand, 20995662 - 20995596
Alignment:
Q  653 cgtgagccggggtccaattcccaaattgcaatccttaaccagctcacataccatgttaaataggctt 719  Q
    |||| ||| ||||| |||| ||| ||||||||| |||||| |||| |||| ||||||||||||||||    
T  20995662 cgtgggcccgggtctaatttccacattgcaatctttaaccggctctcatatcatgttaaataggctt 20995596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Complemental strand, 3732709 - 3732648
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatgatcgcac 833  Q
    |||| ||| |||||||| |||||||||| ||||||| | ||||||||  |||||||||||||    
T  3732709 caagtacgcttaactgcggagttctgatcagatccggtgcattagtgccggtatgatcgcac 3732648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 567
Target Start/End: Complemental strand, 42643114 - 42643057
Alignment:
Q  510 gcttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||||||  ||||||||  ||||||||||| | |||||||| |||||||||    
T  42643114 gcttggatctcatctcaaaaattaacttaaatgatgatggtattcaaatatatttata 42643057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 567
Target Start/End: Original strand, 28843220 - 28843273
Alignment:
Q  514 ggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttata 567  Q
    ||||||||||  ||||| ||||||||| |||||||||||||||| |||||||||    
T  28843220 ggatctcatctcaaaaactagtttaaaggatgaggatattcaaaaatatttata 28843273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 512 - 574
Target Start/End: Complemental strand, 370848 - 370787
Alignment:
Q  512 ttggatctcatccaaaaaattagtttaaatgatgaggatattcaaacatatttataaactcaa 574  Q
    |||||||||||| ||||  ||||||||||||| |||| || ||||||||||||||| ||||||    
T  370848 ttggatctcatctaaaag-ttagtttaaatgacgagggtactcaaacatatttatacactcaa 370787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 772 - 827
Target Start/End: Complemental strand, 56 - 1
Alignment:
Q  772 caagcacgtttaactgcagagttctgatgagatccgatacattagtgttggtatga 827  Q
    |||||||| |||||||| ||||||||||| |||||| | |||||||| ||||||||    
T  56 caagcacgcttaactgcggagttctgatgggatccggtgcattagtgctggtatga 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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