View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367R-Insertion-3 (Length: 940)
Name: NF3367R-Insertion-3
Description: NF3367R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367R-Insertion-3 |
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| [»] scaffold0867 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 6 - 815
Target Start/End: Original strand, 22070620 - 22071424
Alignment:
| Q |
6 |
tcacatggtggctttgatttgaatttgattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtata |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22070620 |
tcacatggtggctttgatttgaatttgattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtata |
22070719 |
T |
|
| Q |
106 |
gtatatcaaaatatacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaata |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22070720 |
gtatatcaaaatatacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaata |
22070819 |
T |
|
| Q |
206 |
tatttttgggatatagaatttgatttcaacagcataacccccatgttgtctttggtgcaggtttgtattcacggctacacggttaaaggctgttgccgca |
305 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
22070820 |
tatttttgggatatagaatttgatttcaacaaaataacccccatgttgcctttggtgcaggtttgtattcacggctgcacggttaaaggcggttgccgca |
22070919 |
T |
|
| Q |
306 |
attcagcgaaggccagctcctcaacaaccatctc---------gaatgaacannnnnnnctctttcttgcattttgtattattaaacccttgataggaag |
396 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22070920 |
attcagcgaaggccagctcctcaacaaccatctctacttagatgaatgaaca--tttttctctttcttgcattttgtattattaaacccttgataggaag |
22071017 |
T |
|
| Q |
397 |
ttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatgctaatatatgtggagaaaataatacaacttaaatatggcccta |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22071018 |
ttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatgctaatatatgtggagaa---aatacaacttaaatatggcccta |
22071114 |
T |
|
| Q |
497 |
atgcatgcacatcagtgcatatatttgtttgttaggcttccaaaagcgttaaaatgagtctacaacatcgttttatgtcagtaatatcaacatacatgtg |
596 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22071115 |
atgcatgcacatcagtgcatatatttgtttgttaggcttcc---------aaaatgagtctacaacatcgttttatgtcagtaatatcaacatacatgtg |
22071205 |
T |
|
| Q |
597 |
tggcaatgtggctaaaattggttttctaatcttaatcaattttggttaattaggttgactctatggccagcttgatgtggctatacatgccaataaccta |
696 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22071206 |
tggcaatgtggctaaaattggttttctaatcttaatcaattttggttaattaggttgactctatggccagcttgatgtggctatacatgccaataaccta |
22071305 |
T |
|
| Q |
697 |
acaatgcannnnnnnnccgaaaattcccatgcttcaatgtatgttttatcattatagaagtcttgtacttgtatctctctaattttagttgtcttcaaac |
796 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22071306 |
acaaggcattttttttccgaaaattcccatgcttcaatgtatgttttatcattatagaagtcttgtacttgtatctctctaattttagttgtcttcaaac |
22071405 |
T |
|
| Q |
797 |
ttatgtaaagttctgtcag |
815 |
Q |
| |
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||||||||||||||||||| |
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| T |
22071406 |
ttatgtaaagttctgtcag |
22071424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 860 - 930
Target Start/End: Original strand, 22071467 - 22071538
Alignment:
| Q |
860 |
aaatgatagttattagattattctttcttactccgagtataaaattattactaaatatga-tatgatattta |
930 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22071467 |
aaatgatagttattagattattctttcttactccgagtataaaattattactaaatatgattatgatattta |
22071538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 356 - 527
Target Start/End: Original strand, 22065017 - 22065181
Alignment:
| Q |
356 |
ctctttcttgcattttgtattattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatgct |
455 |
Q |
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||||||||||||||||||| |||| || | | | ||||| ||||| ||||||||||||||||| || ||| ||||||| ||||||||||||||||| | |
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| T |
22065017 |
ctctttcttgcattttgtaatatttaagcatagtaaggaaattattcgatttcaactcaaatttcttgaactagtttttagttgatcttggattcatgtt |
22065116 |
T |
|
| Q |
456 |
aatatatgtggagaaaataatacaacttaaatatggccctaatgcatgcacatcagtgcatatatttgtttg |
527 |
Q |
| |
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| |||||||||||| ||||||||||||||||| || || |||||||||||||||| |||||||||| |
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| T |
22065117 |
tacatatgtggagaa---aatacaacttaaatatgtcctta----atgcacatcagtgcatctatttgtttg |
22065181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 356 - 513
Target Start/End: Complemental strand, 660400 - 660241
Alignment:
| Q |
356 |
ctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg |
453 |
Q |
| |
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|||||||||||||||||||| |||| | ||| | |||||||||||||| |||||||||| |||| || ||| |||||| ||| |||||||||||||| |
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| T |
660400 |
ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactagtttttcatttatcttggattcatg |
660301 |
T |
|
| Q |
454 |
ctaatatatgtggagaaaataatacaacttaaatatggccctaatgca---tgcacatcagtg |
513 |
Q |
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||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||||| |
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| T |
660300 |
ctaatatatgtggagaa---aatacaactcaaataaagccctaatgcacattgcacatcagtg |
660241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 400 - 519
Target Start/End: Original strand, 22082314 - 22082434
Alignment:
| Q |
400 |
tttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg----ctaatatatgtggagaaaataatacaacttaaatatggccct |
495 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| | |
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| T |
22082314 |
tttgatttcaactcaaattttttgtactggtttttaattgatctatgattcatatatactaatatatgtggagaaaata---caacttaaatatggccgt |
22082410 |
T |
|
| Q |
496 |
aatgcatgcacatcagtgcatata |
519 |
Q |
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||||||| ||||||||||||| |
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| T |
22082411 |
aatgcatatcgatcagtgcatata |
22082434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 22082172 - 22082247
Alignment:
| Q |
119 |
tacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagta |
199 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| ||| |||| ||| ||| ||||||||||||||||||||| |
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| T |
22082172 |
tacagatattatgcccaaataaatgaatgatcctatttc-gttgttaa----agcatgaatatctgtcctaaatttaagta |
22082247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 22064155 - 22064211
Alignment:
| Q |
6 |
tcacatggtggctttgatttgaatttgattata--cttgagtgattatgtatttggt |
60 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
22064155 |
tcacatggtggctttgatttgaatttgattatatttttgagtgattatgtacttggt |
22064211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 660602 - 660556
Alignment:
| Q |
167 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
213 |
Q |
| |
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||||| |||||||||||||| | |||||||||||||||||||||||| |
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| T |
660602 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
660556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 22101009 - 22101058
Alignment:
| Q |
9 |
catggtggctttgatttgaatttgattata--cttgagtgattatgtatt |
56 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
22101009 |
catggtggatttgatttgaatttgattatatttttgagtgattatgtatt |
22101058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 4223 - 4174
Alignment:
| Q |
9 |
catggtggctttgatttgaatttgattata--cttgagtgattatgtatt |
56 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
4223 |
catggtggatttgatttgaatttgattatatttttgagtgattatgtatt |
4174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 680
Target Start/End: Complemental strand, 4043 - 3986
Alignment:
| Q |
623 |
taatcttaatcaattttggttaattaggttgactctatggccagcttgatgtggctat |
680 |
Q |
| |
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|||||||||| | || ||| ||||||||||| ||||||||| ||||||||| |||||| |
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| T |
4043 |
taatcttaatgagttatggctaattaggttgcctctatggcaagcttgatgaggctat |
3986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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