View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367R-Insertion-4 (Length: 940)
Name: NF3367R-Insertion-4
Description: NF3367R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367R-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 729; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 12 - 940
Target Start/End: Original strand, 10447352 - 10448290
Alignment:
| Q |
12 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttatacccaaatttcaaa--atcctattatttttattc |
109 |
Q |
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|||||||||||||||||| | |||||||||| |||| ||||||| |||||||| | ||||| ||||||||||||||||| ||||||| |||||||||| |
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| T |
10447352 |
ttgataaaagtttataaaaa-aagacacttttcatcttataagccggttttacgaagatgaattatacccaaatttcaacgcatcctatcatttttattc |
10447450 |
T |
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| Q |
110 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447451 |
aaatttagtaaagtatatataattacttgcaacctttacaggtaggcttctattatatcggttcatgcggtgaaggttatctttttatgctacttatgac |
10447550 |
T |
|
| Q |
210 |
aaaagagtagtttcatatctcattatgattaggtcattgtggggcccacattgaattgaaaatgggaaggaaaaagtttcctgnnnnnnnnnnnnnnnnn |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
10447551 |
aaaagagtagtttcatatctcattatgattaggtcattgtggggcccacatagaattgaaaatgggaagaaaaaagttttctgaaaaaactaaaaacaaa |
10447650 |
T |
|
| Q |
310 |
ngtgttacctttggtaattgtagtaatttccatgaccctcttatgtttttaaggttctttcttcaatgtttcactctttaattgcacagattcgattcca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10447651 |
agtgttacctttggtaattgtagtaatttccatgaccctcttatgattttaaggttctttcttcaatgtttcactctttaattgcacagattcgattcca |
10447750 |
T |
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| Q |
410 |
tttagaaacatgtggcttgtaatgaaagaaagcatcgtaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaat |
509 |
Q |
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| T |
10447751 |
tttagaaacatgtggcttgtaatgaaagaaagcatcttaaacatactgtaataatttgtaagttccttttatatttcaatttgactttgatttgcttaat |
10447850 |
T |
|
| Q |
510 |
tgtagaaaacccaattcccaatttaatatgctttggattctcaatgcttaaaaaatgttgctttctttgcttttgatgattttagagttaaatattcaac |
609 |
Q |
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| T |
10447851 |
tgtagaaaacccaattcccaatttaatatgctttggattctcaatgcttaaaaattgttgctttctttgcttttgatgattttagagttaaatattcaac |
10447950 |
T |
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| Q |
610 |
atggcttgtaaatgggtgcttcaagaataataaataatctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggag |
709 |
Q |
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| T |
10447951 |
atggcttgtaaatgggtgcttcaagaataataaataatctattcttttttctttcttctgggtcattttgtggttttcttgttgatgaagattgcaggag |
10448050 |
T |
|
| Q |
710 |
tatcattatcaactg--------gtgctagtgtgctactatcattcaatttgtaagagccctttaattttcaatgaaattggccccgccaccattcacc- |
800 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
10448051 |
tatcattatcaactggtgctagcgtgctagtgtgctactatcattcaatttgtaagagccctttaattttcaatgaaattgg-cccttcaccattcacca |
10448149 |
T |
|
| Q |
801 |
aaaacagataaggatgctttttctgttggtgctattcagttagaatcacttaacttatttttgaagttacataaaaatgttcccttttacaagttgtaag |
900 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10448150 |
aaaacagataaggatgctttttctgttagtgctattcagttagaatcacttaacttatttttgaagttacataaaaatgttcccttttacaagttgtaag |
10448249 |
T |
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| Q |
901 |
tagttaaca--cttatttatttatttattaggtttttggcat |
940 |
Q |
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| T |
10448250 |
tagttaacaaccttatttatttatttatt-tgtttttggcat |
10448290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 2716377 - 2716455
Alignment:
| Q |
12 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttatacccaaatttcaa |
90 |
Q |
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||||||||||||||||||||| ||||||| || | |||||||||||||| |||||||||||| ||| |||||||| |
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| T |
2716377 |
ttgataaaagtttataaagaggagacactcctcaccttataagctggttttgtaaggatgagttaggccccaatttcaa |
2716455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 6748281 - 6748203
Alignment:
| Q |
15 |
ataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttata-cccaaatttcaaaa |
92 |
Q |
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| T |
6748281 |
ataaaagtttataaaaaaaagacactcttcatcttataagctggttttgtaaggatgcgttaaattccaaatttcaaaa |
6748203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 10429773 - 10429854
Alignment:
| Q |
12 |
ttgataaaagtttataaagagaagacactttacatcctataagctggttttacaaggatgagttata-cccaaatttcaaaa |
92 |
Q |
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||||||| ||||||||||||| ||||||| |||| || |||| |||||| |||||||||||| | |||||||||||||| |
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| T |
10429773 |
ttgataagagtttataaagaggagacactcctcatcttacaagccggttttgtaaggatgagttagaccccaaatttcaaaa |
10429854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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