View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3367R-Insertion-9 (Length: 440)

Name: NF3367R-Insertion-9
Description: NF3367R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3367R-Insertion-9
NF3367R-Insertion-9
[»] chr7 (1 HSPs)
chr7 (60-436)||(43939308-43939701)
[»] chr1 (4 HSPs)
chr1 (60-175)||(32626905-32627015)
chr1 (60-174)||(24489802-24489911)
chr1 (60-174)||(24498136-24498245)
chr1 (60-174)||(24485307-24485416)
[»] chr5 (2 HSPs)
chr5 (60-174)||(34289973-34290082)
chr5 (60-174)||(34296607-34296716)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 60 - 436
Target Start/End: Original strand, 43939308 - 43939701
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatat----------------tgccatacacaatggcc 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||                |||||||||| ||||||    
T  43939308 tacgctccactaatagtaggagttagttttctatactgtgtatcattctgtaactatatatatatatatatatatatatatattgccatacactatggcc 43939407  T
Q  144 atcggaatcatagaattatcattcccttttaagaccaaagtaaa-tttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 242  Q
    ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939408 atcagaatcattgaattatcattcccttttaagaccaaagtaaaatttaaaaataaccaaagggttcaaaagtgtaatttagggatttagattagacgcg 43939507  T
Q  243 gtaactctaagacttggccgtttgatttaaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 342  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43939508 gtaactctgagacttggccgtttgatttgaatctacggccaagatcagttaactatgaaactggctatgtaatataaacaatcctatctcaaatcaacga 43939607  T
Q  343 acaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagactcttgttaat 436  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43939608 tcaaaatcacataccataccataatttagctagcctaaactagtaaagatctaattaaagagaaaaagaataaggaacatagaattttgttaat 43939701  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 32627015 - 32626905
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| | ||| || |||    
T  32627015 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 32626922  T
Q  159 ttatcattcccttttaa 175  Q
    |||||||||||||||||    
T  32626921 ttatcattcccttttaa 32626905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 24489911 - 24489802
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| | ||| || |||    
T  24489911 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24489818  T
Q  159 ttatcattccctttta 174  Q
    ||||||||||||||||    
T  24489817 ttatcattccctttta 24489802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 24498245 - 24498136
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| | ||| || |||    
T  24498245 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 24498152  T
Q  159 ttatcattccctttta 174  Q
    ||||||||||||||||    
T  24498151 ttatcattccctttta 24498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 60 - 174
Target Start/End: Complemental strand, 24485416 - 24485307
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| |  || || |||    
T  24485416 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtgtcaattgaa 24485323  T
Q  159 ttatcattccctttta 174  Q
    ||||||||||||||||    
T  24485322 ttatcattccctttta 24485307  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 34289973 - 34290082
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| | ||| || |||    
T  34289973 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34290066  T
Q  159 ttatcattccctttta 174  Q
    ||||||||||||||||    
T  34290067 ttatcattccctttta 34290082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 34296607 - 34296716
Alignment:
Q  60 tacgctccactaatagtaggagttagttttctatactgtgtatcaatctgtaactatttatatatattgccatacacaatggccatcggaatc-atagaa 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||  ||||||||| | ||| || |||    
T  34296607 tacgctccactaatagtaggagttagttttctatactgtgtatcagtctgtaac------tatatattgccatacattatggccatcagtatcaattgaa 34296700  T
Q  159 ttatcattccctttta 174  Q
    ||||||||||||||||    
T  34296701 ttatcattccctttta 34296716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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