View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_high_1 (Length: 652)
Name: NF3367_high_1
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 9 - 635
Target Start/End: Original strand, 38679594 - 38680223
Alignment:
| Q |
9 |
agcagagacatgtttggtgcttaagaagcatagaagacagtctcggaagaagactaaccaataaattttagatgatcttgatgatgacgacaatttgctt |
108 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38679594 |
agcagagccacgtttggtgcttaagaagcatagaagacagtctcggaagaagactaaccaatcaattttagatgatcttgatgatgacgacaatttgctt |
38679693 |
T |
|
| Q |
109 |
gatgaggagaacgatccccttttaaatgctttgaggaatgaaaatccttaaatttttcgttaatccccgttatactgattgtaaatatttcctttcggct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679694 |
gatgaggagaacgatccccttttaaatgctttgaggaatgaaaatccttaaatttttcgttaatccccgttatactgattgtaaatatttcctttcggct |
38679793 |
T |
|
| Q |
209 |
tgtatctctgggtcaagtgagttcccattag-ttcgatccgagtcttctgtcactttggttctatcttgtacagagtatgtgcaaatgacattaacaaac |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679794 |
tgtatctctgggtcaagtgagttcccattagtttcgatccgagtcttctgtcactttggttctatcttgtacagagtatgtgcaaatgacattaacaaac |
38679893 |
T |
|
| Q |
308 |
acaccgttctggattatgatgttccttgctgattgcatataaatgaattgcaagcatcatacaatcattttagattagatcagctagttccaactatatt |
407 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679894 |
acaccgatctggattatgatgttccttgctgattgcatataaatgaattgcaagcatcatacaatcattttagattagatcagctagttccaactatatt |
38679993 |
T |
|
| Q |
408 |
agacaatttggttaatgccttatgnnnnnnncgtattatttcggttttttaaactacagatacgttagacaatttggttatcaatctctttgaag--nnn |
505 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38679994 |
agacaatttggttaatgcctaatgtttttttcgtattatttcggttttttaaactacagatacgttagacaatttggttatcaatctctttgaagaaaaa |
38680093 |
T |
|
| Q |
506 |
nnnnntgttgcacaatttggttaagttattttcttttctttttgatcatttaatatacaaatattaggtgatttaataatttaagttgtaaaatttagac |
605 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38680094 |
aaaaatgttgcacaattgggttaagttattttcttttctttttgatcatttaatatacaaatattaggtgatttaataatttaagttgtagaatttagac |
38680193 |
T |
|
| Q |
606 |
actttaagcattcgtatgaatgatcgaaat |
635 |
Q |
| |
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|||||||||||| ||||||||||||||||| |
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| T |
38680194 |
actttaagcatttgtatgaatgatcgaaat |
38680223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 367
Target Start/End: Complemental strand, 38663633 - 38663274
Alignment:
| Q |
9 |
agcagagacatgtttggtgcttaagaagcatagaagacagtctcggaagaagactaaccaataaattttagatgatcttgatgatgacgacaatttgctt |
108 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38663633 |
agcagagccacgtttggtgcttaagaagcatagaagacagtctcggaagaagactaaccaatcaattttagatgatcttgatgatgacgacaatttgctt |
38663534 |
T |
|
| Q |
109 |
gatgaggagaacgatccccttttaaatgctttgaggaatgaaaatccttaaatttttcgttaatccccgttatactgattgtaaatatttcctttcggct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663533 |
gatgaggagaacgatccccttttaaatgctttgaggaatgaaaatccttaaatttttcgttaatccccgttatactgattgtaaatatttcctttcggct |
38663434 |
T |
|
| Q |
209 |
tgtatctctgggtcaagtgagttcccattag-ttcgatccgagtcttctgtcactttggttctatcttgtacagagtatgtgcaaatgacattaacaaac |
307 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663433 |
tgtatctctgggtcaagtgagttcccattagtttcgatccgagtcttctgtcactttggttctatcttgtacagagtatgtgcaaatgacattaacaaac |
38663334 |
T |
|
| Q |
308 |
acaccgttctggattatgatgttccttgctgattgcatataaatgaattgcaagcatcat |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663333 |
acaccgttctggattatgatgttccttgctgattgcatataaatgaattgcaagcatcat |
38663274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 38663259 - 38663215
Alignment:
| Q |
364 |
tcatacaatcattttagattagatcagctagttccaactatatta |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38663259 |
tcatacaatcattttagattagatcagctagttccaactatatta |
38663215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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