View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_high_2 (Length: 508)
Name: NF3367_high_2
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 13 - 508
Target Start/End: Original strand, 32239903 - 32240397
Alignment:
| Q |
13 |
tctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcatagctaggtgctacttctgtgtgctatattatggtga |
112 |
Q |
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| T |
32239903 |
tctgctatttctattttgttttttacctcttttgcagtggctggttgttttcagccaatttcatagctaggtgctacttctgtgtgctatattatggtga |
32240002 |
T |
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| Q |
113 |
aagtaatgggttagagatgtaggctttttgtattctaatgtgatctattaatcttacaatagaacctcttcaaatccaactgttccatacactaccagcg |
212 |
Q |
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| T |
32240003 |
aagtaatgggttagagatgcaggctttttgtattctaatgtgatctattaatcttacaatagaacctcttcaaatccaactgttccatacactaccagcg |
32240102 |
T |
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| Q |
213 |
ggatccgcccttcttcgcttctgctgctactctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcctgttcctttttactttcnnnn |
312 |
Q |
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| T |
32240103 |
ggatccgcccttcttcgcttctgctgctgctctctgtgggttttctggtttctgaggatatgtagctgggtgctacgcctgttcctttttactttc-ttt |
32240201 |
T |
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| Q |
313 |
nnnnnngtgtgtggtttataggcttctacggtgctctctggggtttccactcacagagcacctataaaaggtgttaaacttttgtcagaaggtttgaaaa |
412 |
Q |
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| T |
32240202 |
ttttttgtgtgtggtttataggcttctgcggtgctctctggggtttccactcacagagcacctataaaaggtgttaaacttttgtcagaaggtttgaaaa |
32240301 |
T |
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| Q |
413 |
ttttgtcttttgttcagagattctgaaatccccctgttttaatttaattttcacttggattggttgattaaacactgcattttatctttctttttt |
508 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
32240302 |
ttttgtcttttgttcagagattctgaaacccccctgttttaatttaattttcacttggattggttgattaaacaatgcattttatctgtctttttt |
32240397 |
T |
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