View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3367_high_20 (Length: 251)

Name: NF3367_high_20
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3367_high_20
NF3367_high_20
[»] chr8 (3 HSPs)
chr8 (1-85)||(44043057-44043141)
chr8 (189-242)||(44042862-44042915)
chr8 (132-180)||(44042954-44043002)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44043141 - 44043057
Alignment:
Q  1 tccatcgaaaggagtagtttcaatacgggagacattgaagagcaccatggttgattgattacctgattgaagaaaaacgaaatct 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44043141 tccatcgaaaggagtagtttcaatacgggagacattgaagagcaccatggttgattgattacctgattgaagaaaaacgaaatct 44043057  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 44042915 - 44042862
Alignment:
Q  189 gagtgagtgagtgagaggttccgtaagaaaaatgatttgagattgtgtctgtgc 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44042915 gagtgagtgagtgagaggttccgtaagaaaaatgatttgagattgtgtttgtgc 44042862  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 44043002 - 44042954
Alignment:
Q  132 gtggtagttattaatattaataggaatgaagaaaagatagagaaatgaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44043002 gtggtagttattaatattaataggaatgaagaaaagatagagaaatgaa 44042954  T

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