View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_high_24 (Length: 239)
Name: NF3367_high_24
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 781468 - 781255
Alignment:
| Q |
1 |
tcgaagagtacggtaaaactacacacactaaatgttgaaaaatttagaattaaagttctaa-------tgaacctacaccagaacatatcaaatttctcc |
93 |
Q |
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| T |
781468 |
tcgaagagta-ggtaaaactacacacactaaatattgaaaaatttagaattaaagttctaacttctaataaacctacaccgcaacatatcaaatttctcc |
781370 |
T |
|
| Q |
94 |
gtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatttatttttatcttttactgatttttaggatg |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
781369 |
gtatcattttaccatctaaattatacactctttttaagcatgagttgtacacttaactttacaacacatttatttttatcttttactgatttttaggatg |
781270 |
T |
|
| Q |
194 |
aaatttggtcctata |
208 |
Q |
| |
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|||||||||| |||| |
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| T |
781269 |
aaatttggtcatata |
781255 |
T |
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