View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_high_25 (Length: 238)
Name: NF3367_high_25
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_high_25 |
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| [»] scaffold0186 (1 HSPs) |
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Alignment Details
Target: scaffold0186 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 24974 - 24798
Alignment:
| Q |
1 |
atatcgaatttgcaatgaagagacaatttttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttgga |
100 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24974 |
atattgaatttgcaataaagagacaatttttatgacactaaaatctactttaaaatagcttacatgcatcatgagtcttaacaagttatctacccttgga |
24875 |
T |
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| Q |
101 |
tttgataataactaactaaaatcaaaatacctacatatgttttccagatactaaaatgatttgaccaagtaaatgat |
177 |
Q |
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||||||| |||||||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
24874 |
tttgatagtaactaactaaaatcagaatatctacgtatgttttccagatactaatatgatttgaccaactaaatgat |
24798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 1085052 - 1085199
Alignment:
| Q |
30 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
129 |
Q |
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| T |
1085052 |
ttatgatactaaaatctactttaaaataacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaatcaaaata |
1085151 |
T |
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| Q |
130 |
cctacatatgttttccagatactaaaatgatttgaccaagtaaatgat |
177 |
Q |
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| T |
1085152 |
cctacatatgttttccaaatattgatatgatttgaccaagtaaatgat |
1085199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 24997601 - 24997459
Alignment:
| Q |
30 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
129 |
Q |
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|||||| |||||||| |||| ||| || ||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
24997601 |
ttatgatactaaaatctactttaatatcacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaatcaaaata |
24997502 |
T |
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| Q |
130 |
cctacatatgttttccagatactaaaatgatttgaccaagtaa |
172 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
24997501 |
cctacatatgttttccaaatactgatatgatttgaccaagtaa |
24997459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 11352224 - 11352083
Alignment:
| Q |
30 |
ttatgacactaaaatatactctaaaatagcttacatgcatcatgagtcttaacaagttatctacgcttggatttgataataactaactaaaatcaaaata |
129 |
Q |
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|||||| |||||||| |||| ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
11352224 |
ttatgatactaaaatctactttaaaataacttacatgcataatgagtcttaacaagctatctacccttggatttgatagaaactaactaaaat-aaaata |
11352126 |
T |
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| Q |
130 |
cctacatatgttttccagatactaaaatgatttgaccaagtaa |
172 |
Q |
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||||||||||||||||| ||||| | ||||||||||||||||| |
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| T |
11352125 |
cctacatatgttttccaaatactgatatgatttgaccaagtaa |
11352083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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