View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_high_6 (Length: 422)
Name: NF3367_high_6
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 374
Target Start/End: Original strand, 11247333 - 11247645
Alignment:
| Q |
59 |
tttatgagcattgtcatgctcaatttatttctttgcatttggttgatctgttgggagttgccatctctagtctagacgttgtttagtgcttcttcagcat |
158 |
Q |
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| T |
11247333 |
tttatgagcattgtcatgctcaatttatttctttgcatttggttgatttgttgggagttgccatctctagactaattgttgtttagtcattcttcagcat |
11247432 |
T |
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| Q |
159 |
ctgacactctttatttccaaaaagaattattattattgttattattcaaaacggtgaacttcgaccacaagattgatacatctcttaagatttnnnnnnn |
258 |
Q |
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| T |
11247433 |
ctgacactctttatttccaaaaagaatcattattattgttattattcaaaatggtgaacttcgaacacaagattgattcatctcttaagattt-aaaaaa |
11247531 |
T |
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| Q |
259 |
tgtttatataaatttctgtttgtaaagacaaaaagtaaagaatacaaatagattattagtgtgg-aacccgagaagaatgggcattattcggtgcggagt |
357 |
Q |
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| T |
11247532 |
tgtttatataaatttctgtttttaaagacaaaaactaaagaatacaaatag---attagtgtggaaacccgagaagaatgggcattattcggtgcggagt |
11247628 |
T |
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| Q |
358 |
gtgtatcgtctttttgt |
374 |
Q |
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|| ||| |||||||||| |
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| T |
11247629 |
gtatatggtctttttgt |
11247645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 29206511 - 29206577
Alignment:
| Q |
328 |
gagaagaatgggcattattcggtgcggagtgtgtatcgtctttttgtcgaagatattgtggataata |
394 |
Q |
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| T |
29206511 |
gagaagaatgggcattattcggtaccaagtgcgtatcgtctttgtgtcaaagatattgtgaataata |
29206577 |
T |
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