View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_low_11 (Length: 300)
Name: NF3367_low_11
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 17027373 - 17027642
Alignment:
| Q |
17 |
ccttcctctttacaagggttaccttatcaccatctttctcggtgagtgtcgtcaattttcctgaaggtcaggcataatatgtttgtgaccaacatgaaag |
116 |
Q |
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| T |
17027373 |
ccttcctctttacaagggttaccttacctccacctttctcggtgagtgtcgtcaattttcctgaaggtcaggcataat--gtttgtgaccaacatgaaag |
17027470 |
T |
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| Q |
117 |
aaaagttattagtgacaaactaacacaaaaaacaaaatataagttaataaactatacctagaaatgccttaatttctgcaacactcgagcacctgacaag |
216 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17027471 |
caaagtta---gtgacaaactaacacaaaaaacaaaatataagttaataaactatacctagaaatgccttaatttctgcaacactcgagcacctgacaag |
17027567 |
T |
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| Q |
217 |
cttaaaagcatcgatgaaacagggctaactaagaggaaggatctcaatattatataagggctttcccactaccta |
291 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17027568 |
cttaaaagcgtcgatgaaacggggctaactaagaggaaggatctcaatattatataagggctttcccgctaccta |
17027642 |
T |
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