View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_low_13 (Length: 300)
Name: NF3367_low_13
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 32391499 - 32391234
Alignment:
| Q |
14 |
cagagagtatgcaatgttgggcacgttgcatttcacactgttcgtgctgttagtgtgcacagcagattgcacgctgtttgtgttacggaaccttataaca |
113 |
Q |
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| T |
32391499 |
cagagattatgcaatgttgggcacgttgcatttcacattgttcgtgctgttagtgtgcacagcagattgcacgctgt--gtgttacggaaccttataaca |
32391402 |
T |
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| Q |
114 |
caaaggttctccaacacaaacatcgtgcaatctgctgtgcacagtaatagaataaacaacagcgacattcaagaaccacctctgcaaggttgcgtgaaat |
213 |
Q |
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| T |
32391401 |
caaaggttctccaacacaaacagcgtgcaatctgctgtgcacagtaatagaataaacaacagcgacattcaagaaccacctctgcaaggttgcgtgaaat |
32391302 |
T |
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| Q |
214 |
gcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgtatcagaggaacg |
281 |
Q |
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| T |
32391301 |
gcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgcatcagaggaacg |
32391234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 32391359 - 32391389
Alignment:
| Q |
67 |
tgtgcacagcagattgcacgctgtttgtgtt |
97 |
Q |
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| T |
32391359 |
tgtgcacagcagattgcacgctgtttgtgtt |
32391389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 276
Target Start/End: Complemental strand, 26160815 - 26160729
Alignment:
| Q |
177 |
gacattcaagaaccacctctgcaaggttgcgtgaaatgcaacatagacgccgacttcaatcactcattaaactttactagctacggatgttgtatcagag |
276 |
Q |
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| T |
26160815 |
gacattcaggaaccacctctgcaaggttgcgtgaaatgcaacat-------------aatcactcattaaactttactagctacggttgttgcatcagag |
26160729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 26160869 - 26160819
Alignment:
| Q |
26 |
aatgttgggcacgttgcatttcacactgttcgtgctgttagtgtgcacagc |
76 |
Q |
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| T |
26160869 |
aatgttgtgcacgttgcatttcacgcggttcgtgctgttactgtgcacagc |
26160819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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