View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_low_14 (Length: 295)
Name: NF3367_low_14
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 12804351 - 12804631
Alignment:
| Q |
1 |
agagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtcttccagaaacaagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12804351 |
agagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtcttccagaaacaagatc |
12804450 |
T |
|
| Q |
101 |
aaggcgcatttctccaaaggtgtagctagttgag-------------atgactatgcaattgaaaataagggtgaggcaaatgtctcatcaatgcatatt |
187 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12804451 |
aaggcgcatttctccaaaggtgtagctagtttaggattaattaatccatgactatgcaattgaaaataagggtgaggcaaatgtctcatcaatgtatatt |
12804550 |
T |
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| Q |
188 |
ggaaatgtttccttaattatgctctcattcaaataagtggtgaattgtgagagtattgacacttttatggttgtattttca |
268 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12804551 |
ggatatgtttccttaattatgctctcattcaaataagtggtgaattgtgagagtattgacacttttatggttgtattttca |
12804631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12780861 - 12780994
Alignment:
| Q |
1 |
agagagaaaatatagctgaagctgaaccttatgcagatcaaagtagtccaagttcagatgtggagactgaattgttcattggtcttccagaaacaagatc |
100 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
12780861 |
agagagaaaatatagttgaagctgaaacttatgcagatcaaagtagtccaagttcagatgtggaaactgaattgttcattggtcttccagaaacaagaac |
12780960 |
T |
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| Q |
101 |
aaggcgcatttctccaaaggtgtagctagttgag |
134 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12780961 |
aaggcgcatttctccaaaggtgtagctagttgag |
12780994 |
T |
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