View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_low_3 (Length: 470)
Name: NF3367_low_3
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 10 - 452
Target Start/End: Complemental strand, 4805030 - 4804589
Alignment:
| Q |
10 |
gcacagatctgagttatttttattaatgtttttaaattgtttatgtaagannnnnnnnnnnctttccaaaagcatagttcatataagagaatcatgtgat |
109 |
Q |
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| T |
4805030 |
gcacagatctgagttatttttattaatgtttttaaattgtttatgtaagattttttttt--ctttccaaaagcatagttcatataagagaatcatgtgat |
4804933 |
T |
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| Q |
110 |
actaaatttgagtttggattgaataatgaatagtttatttggacatttctattggtgttagtcaatacttgttagagtattgggctaatattatgaagca |
209 |
Q |
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| T |
4804932 |
actaaatttgagtttggattgaataatgaatagtttatttggacatttctattggtgttagtcaatacttgtcagagtattgggctaatattatgaagca |
4804833 |
T |
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| Q |
210 |
actctctataagctgttctctaattttgtcaa-tgataacccatgaaaaaaccctgtggtttatgtgaaacaacttaacctcttgcagcttttgataaac |
308 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4804832 |
actctctataagctgttctctaattttgtcaaatgataacctatgaaaaaaccctgtggtttatgtgaaacaacttaacctcttacagcttttgataaac |
4804733 |
T |
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| Q |
309 |
tttataggataaattatcttttgctgggagtcactttgtttagatctatcattaaggctattccagtttattctgtgatgattataactattctcagtga |
408 |
Q |
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| T |
4804732 |
tttataggataaattatcttttgctgggagtcactttgtttagatctatcattaaggctattccagtttattctgtgatgattatgactattctcagtga |
4804633 |
T |
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| Q |
409 |
ttgccatttaagattcggaaggctttctttaggatgatgatggt |
452 |
Q |
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| T |
4804632 |
ttgccatttaagattcggaaggctttctttaggatgatgatggt |
4804589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 282 - 412
Target Start/End: Original strand, 40025119 - 40025251
Alignment:
| Q |
282 |
cttaacctcttgcagcttttgataaactttataggata--aattatcttttgctgggagtcactttgtttagatctatcattaaggctattccagtttat |
379 |
Q |
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||||||||||| || ||||||||||||||||||| ||| |||||||||||||||| |||||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
40025119 |
cttaacctcttacaacttttgataaactttatagaatagcaattatcttttgctggaagtcacattgtttaggtctatcattgaggctattccagtttat |
40025218 |
T |
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| Q |
380 |
tctgtgatgattataactattctcagtgattgc |
412 |
Q |
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| T |
40025219 |
tatgtgatgattatgattattctcaatgattgc |
40025251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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