View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3367_low_9 (Length: 312)
Name: NF3367_low_9
Description: NF3367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3367_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 34432545 - 34432231
Alignment:
| Q |
1 |
tcctttataagtaaatttattgaaaaacgatgaaaagcgttgaattcaactaatcttacagttgcattaaccaacaaaatataccttgtttactactttt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432545 |
tcctttataagtaaatttattgaaaaatgatgaaaagtgttgaattcaactaatcttacagttgcattaaccaacaaaatataccttgtttactactttt |
34432446 |
T |
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| Q |
101 |
aaaatataaatttcattaaccactttaattattttattaaccaaaaatgcaaaacattttcaaaattacaatacannnnnnngtggaaaatattacaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
34432445 |
aaaatataaatttcattaaccactttaattattttattaaccaaaaatgcaaaacattttcaaaattacaatacatttttttgaggaaaatattacaata |
34432346 |
T |
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| Q |
201 |
catagattccaaaagtgtttaacagtagtacca---nnnnnnngttaacaaagcagtaaaaatgattaatgacacgtgtttttgtattttaaaaattctc |
297 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34432345 |
catagattccaaaagtgtttaacagtagtaccattttttttttgttaacaaagcagtaaaaatgattaatgacacgtgtttttgtattttaaaaattctc |
34432246 |
T |
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| Q |
298 |
ctctataagaaaaaa |
312 |
Q |
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||||||||||||||| |
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| T |
34432245 |
ctctataagaaaaaa |
34432231 |
T |
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