View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3368_high_2 (Length: 531)

Name: NF3368_high_2
Description: NF3368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3368_high_2
NF3368_high_2
[»] chr2 (5 HSPs)
chr2 (140-513)||(26661746-26662121)
chr2 (315-513)||(26666163-26666359)
chr2 (396-465)||(26662301-26662370)
chr2 (1-42)||(26661603-26661644)
chr2 (1-36)||(6050008-6050043)
[»] chr6 (3 HSPs)
chr6 (140-313)||(21481663-21481840)
chr6 (396-457)||(19702539-19702600)
chr6 (1-42)||(21481521-21481562)
[»] chr1 (3 HSPs)
chr1 (396-465)||(22902560-22902629)
chr1 (389-464)||(46886067-46886142)
chr1 (1-42)||(22893898-22893939)
[»] chr4 (1 HSPs)
chr4 (1-36)||(13893697-13893732)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-42)||(9688-9729)
[»] chr8 (2 HSPs)
chr8 (1-42)||(10637743-10637784)
chr8 (1-42)||(32717810-32717851)


Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 140 - 513
Target Start/End: Original strand, 26661746 - 26662121
Alignment:
Q  140 ccactgtttggcaattcttgttttttcctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taacttttc 236  Q
    |||||||||||||||||||||||||||| |||||||||||||||         |||||||||||||||||||||||||| ||||||||   ||||||||     
T  26661746 ccactgtttggcaattcttgttttttcccaatcatgaatcaatg-aaaaaaaaggttagagacaacttgtttttattaaaccaccttcttctaacttttt 26661844  T
Q  237 ccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtgttataactctaatgttga 336  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26661845 ccaaaatatgctaataaccataacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagcctgtgttataactctaattttga 26661944  T
Q  337 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaaatgtgacatattatctaagaaagtgaga 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661945 aaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaaatgtgacatattatctaagaaagtgaga 26662044  T
Q  437 tttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaatcatactttgaattcatttactctat 513  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26662045 tttgtcaaatttggaatcattatatatttattagttgtgtaatgacatcaattatactttgaattcatttactctat 26662121  T

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Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 315 - 513
Target Start/End: Original strand, 26666163 - 26666359
Alignment:
Q  315 tgtgttataactctaatgttgaaaatgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaaatgtga 414  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26666163 tgtgttataactctaattttgaaa-tgaagtatataacatgttcttttttcaacttttatactgcttaatattatccatagatgatgttcccaagtgtga 26666261  T
Q  415 catattatctaagaaagtgagatttgtcaaatttggaatcactatatatttattagttgtgtaatgacatcaatcatactttgaattcatttactctat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26666262 catattatctaagaaagtgagatttgtcaaatttggaatcactatata-ttattagttgtgtaatgacatcaattatactttgaattcatttactctat 26666359  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 26662301 - 26662370
Alignment:
Q  396 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatattt 465  Q
    ||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26662301 atgatatttccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatatattt 26662370  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26661603 - 26661644
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  26661603 ttccattactcaacatagatttggtgattgatatcaattctc 26661644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6050008 - 6050043
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatca 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  6050008 ttccattactcaacatagatttggtgattgatatca 6050043  T

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Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 140 - 313
Target Start/End: Original strand, 21481663 - 21481840
Alignment:
Q  140 ccactgtttggcaattcttgtttttt-cctaatcatgaatcaatgcnnnnnnnnggttagagacaacttgtttttattaacccaccttc---taactttt 235  Q
    |||||||||||||||||||||||||| || ||||||||||||||||        | |||||||||||||||||||||||||||||||||   ||||||||    
T  21481663 ccactgtttggcaattcttgtttttttcccaatcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttctaactttt 21481762  T
Q  236 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481763 cccaaaatatgctaataaccatgacgctgaattctttgttcgtaaaacttcagcatgtgctagtaataaccaataagc 21481840  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 19702539 - 19702600
Alignment:
Q  396 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcact 457  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||  |||||||    
T  19702539 atgatattcccaagtgtgaaatattatctaagaaagtgaaatttgtcaaatttaaaatcact 19702600  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21481521 - 21481562
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  21481521 ttccattactcaacatagatttggtgattgatatcaattctc 21481562  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 22902560 - 22902629
Alignment:
Q  396 atgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatattt 465  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22902560 atgatattcccaagtgtgaaatattatctaagaaagtgagatttgtcaaatttggaatcactatgtattt 22902629  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 464
Target Start/End: Complemental strand, 46886142 - 46886067
Alignment:
Q  389 tccatagatgatgttcccaaatgtgacatattatctaagaaagtgagatttgtcaaatttggaatcactatatatt 464  Q
    |||||| ||||| ||||||| ||| | || |||||||||||||||||||||||||||||| |||||||||||||||    
T  46886142 tccatatatgatattcccaagtgtaaaattttatctaagaaagtgagatttgtcaaatttagaatcactatatatt 46886067  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22893898 - 22893939
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  22893898 ttccattactcaacatagatttggtgatttatatcatttctc 22893939  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13893732 - 13893697
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatca 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13893732 ttccattactcaacatagatttggtgattgatatca 13893697  T

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Target: scaffold0586 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9688 - 9729
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  9688 ttccattactcaacatagatttggtgatttatatcatttctc 9729  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10637743 - 10637784
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  10637743 ttccattactcaacatagatttggtgatttatatcatttctc 10637784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32717851 - 32717810
Alignment:
Q  1 ttccattactcaacatagatttggagattgatatcaattctc 42  Q
    |||||||||||||||||||||||| |||| |||||| |||||    
T  32717851 ttccattactcaacatagatttggtgatttatatcatttctc 32717810  T

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